PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00622g08001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21311.9 Da PI: 7.941 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.8 | 4.5e-12 | 15 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd ll ++++ + W++Ia +++ gRt++++k++w+++ Peinf101Scf00622g08001.1 15 KGSWTEEEDFLLRKCIE----K-WSLIAGRLP-GRTANDVKNYWNTH 55 799*************8....4.9********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.269 | 10 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-12 | 11 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 12 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-9 | 14 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-11 | 15 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-11 | 17 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNTIPICTPT LGVRKGSWTE EEDFLLRKCI EKWSLIAGRL PGRTANDVKN YWNTHFQRKL 60 FSPQIQGKKC RSAVKITENT IIRPQPRNFS STKNVSLGRN KSITNGTIHK DETSKTIIRT 120 NEKQTTEAST DNGDQWWASL LDDRNEFDEE AAAGKTPSCK INSELETPTL LQEGETGWGD 180 IDLWSLLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256541.1 | 4e-49 | PREDICTED: transcription factor MYB113-like | ||||
TrEMBL | A0A3Q8CAG5 | 1e-109 | A0A3Q8CAG5_PETHY; Anthocyanin synthesis regulator 2 | ||||
STRING | XP_009626596.1 | 5e-43 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-16 | myb domain protein 113 |