PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00622g07006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24376.5 Da PI: 8.3231 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.2e-15 | 15 | 79 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd ll ++++++G g W++Ia +++ gRt++++k++w++ Peinf101Scf00622g07006.1 15 KGSWTEEEDFLLRKCIEKYGEGkwhlvpniyielvssyhmhsMWSLIAGRLP-GRTANDVKNYWNT 79 799*************************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.402 | 10 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.38E-14 | 12 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 14 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 14 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.3E-7 | 15 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.83E-11 | 17 | 81 | No hit | No description |
Pfam | PF00249 | 3.3E-6 | 55 | 79 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MNTIVICTPT LGVRKGSWTE EEDFLLRKCI EKYGEGKWHL VPNIYIELVS SYHMHSMWSL 60 IAGRLPGRTA NDVKNYWNTN FRRKLSPQRQ GKRCRSAIKI TENTIIRPQP RIFSSAKNVS 120 LGSNKSITNS TIHKDESSKN IIRTNEKQMT EASTENGVQW WASLLDDPNE FDKEAATGSI 180 PSNSCNINSK EELPTFLQEG ETGWGDIDLW SLLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF433417 | 7e-34 | EF433417.1 Solanum chilense anthocyanin 1 (ANT1) mRNA, complete cds. | |||
GenBank | FJ235121 | 7e-34 | FJ235121.1 Solanum habrochaites anthocyanin 1 (ANT1) mRNA, complete cds. | |||
GenBank | HG975449 | 7e-34 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256541.1 | 5e-66 | PREDICTED: transcription factor MYB113-like | ||||
TrEMBL | A0A3S6QBA5 | 1e-137 | A0A3S6QBA5_PETHY; Anthocyanin synthesis regulator 1 | ||||
STRING | XP_009626596.1 | 7e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-27 | myb domain protein 113 |