PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00604g01021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 352aa    MW: 38225 Da    PI: 4.8336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00604g01021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-125389138
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                              +g+W++eEd +l ++v  +G ++W++Iar ++ gR+++
  Peinf101Scf00604g01021.1 53 KGPWSPEEDAILSKLVSNFGARNWSLIARGIP-GRSDE 89
                              79******************************.***97 PP

2Myb_DNA-binding51.81.8e-1687127547
                               -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               + eEd l+++a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Peinf101Scf00604g01021.1  87 SDEEDRLILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 127
                               68****************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-125087IPR009057Homeodomain-like
SuperFamilySSF466893.0E-2051124IPR009057Homeodomain-like
SMARTSM007172.75286IPR001005SANT/Myb domain
CDDcd001675.17E-105590No hitNo description
PROSITE profilePS5129420.27180132IPR017930Myb domain
PfamPF002493.0E-1487127IPR001005SANT/Myb domain
CDDcd001671.00E-1287128No hitNo description
SMARTSM007172.8E-1187130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-1988129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
METHSLEILE TSIPVEGSYG GDSGGDDEML ENESGSSENV VKKNKRTSGE RVKGPWSPEE  60
DAILSKLVSN FGARNWSLIA RGIPGRSDEE DRLILQAHAI HGNKWASIAR LLPGRTDNAI  120
KNHWNSTLRR RHNGKLRSDP SNVLEDVSAE KSKASSEETQ SCGDVNSIKA IEGKDVSSQE  180
NQEDNHHEDP YQKNNHNEDK SQAEVQQNEA ANDPPPLVRP VARISAFSVY GSLNVPEAEL  240
QTPRLTPVQA PDLGISKLLE GCFTDRLVPH QCGHGCCGNA SQENNGSSLL GPEFVDYAEP  300
PSFSSHELAA LATEISNVAW CKSGLENSSI EVICNPTTRA TSGTSLLPSR PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26521316107B-MYB
1h88_C3e-265013155158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-265013155158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246368.10.0transcription factor MYB1
TrEMBLA0A2G2VYD50.0A0A2G2VYD5_CAPBA; Transcriptional activator Myb
STRINGSolyc09g011780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-71myb domain protein 1