PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00604g01021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 38225 Da PI: 4.8336 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.2e-12 | 53 | 89 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g+W++eEd +l ++v +G ++W++Iar ++ gR+++ Peinf101Scf00604g01021.1 53 KGPWSPEEDAILSKLVSNFGARNWSLIARGIP-GRSDE 89 79******************************.***97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 87 | 127 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + eEd l+++a++ +G++ W++Iar ++ gRt++ +k++w++ Peinf101Scf00604g01021.1 87 SDEEDRLILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 127 68****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 50 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.0E-20 | 51 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7 | 52 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.17E-10 | 55 | 90 | No hit | No description |
PROSITE profile | PS51294 | 20.271 | 80 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.0E-14 | 87 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-12 | 87 | 128 | No hit | No description |
SMART | SM00717 | 2.8E-11 | 87 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-19 | 88 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
METHSLEILE TSIPVEGSYG GDSGGDDEML ENESGSSENV VKKNKRTSGE RVKGPWSPEE 60 DAILSKLVSN FGARNWSLIA RGIPGRSDEE DRLILQAHAI HGNKWASIAR LLPGRTDNAI 120 KNHWNSTLRR RHNGKLRSDP SNVLEDVSAE KSKASSEETQ SCGDVNSIKA IEGKDVSSQE 180 NQEDNHHEDP YQKNNHNEDK SQAEVQQNEA ANDPPPLVRP VARISAFSVY GSLNVPEAEL 240 QTPRLTPVQA PDLGISKLLE GCFTDRLVPH QCGHGCCGNA SQENNGSSLL GPEFVDYAEP 300 PSFSSHELAA LATEISNVAW CKSGLENSSI EVICNPTTRA TSGTSLLPSR PF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 52 | 131 | 6 | 107 | B-MYB |
1h88_C | 3e-26 | 50 | 131 | 55 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-26 | 50 | 131 | 55 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246368.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | A0A2G2VYD5 | 0.0 | A0A2G2VYD5_CAPBA; Transcriptional activator Myb | ||||
STRING | Solyc09g011780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-71 | myb domain protein 1 |