PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00594g17024.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARR-B
Protein Properties Length: 694aa    MW: 76221.5 Da    PI: 6.2931
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00594g17024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.25.7e-26209264155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ..kYRl 55 
                               k+r++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQ  kYRl
  Peinf101Scf00594g17024.1 209 KARVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQalKYRL 264
                               68*******************.*****************************888997 PP
2Response_reg80.36.2e-27271351109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dli+ D+ mp+mdG++ll+     e++lp+i+++a+++ 
  Peinf101Scf00594g17024.1  27 VLAVDDDPICLKLLDGLLRKCQY-QVTTTSQARMALKMLRENRdrFDLIISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDT 109
                               799********************.***************999889*******************87754.558************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               +++ + ++ Ga d+l+Kp+  eel++
  Peinf101Scf00594g17024.1 110 KLVMKGISHGACDYLVKPVRLEELRN 135
                               ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1595669IPR017053Response regulator B-type, plant
SuperFamilySSF521721.08E-3524149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-4324158No hitNo description
SMARTSM004489.0E-3325137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.94126141IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2427135IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.34E-2928141No hitNo description
PROSITE profilePS5129410.548206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-27206269IPR009057Homeodomain-like
SuperFamilySSF466896.81E-16207268IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-22209263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTVEEIRGNR GSERGNNYDN FPIGMRVLAV DDDPICLKLL DGLLRKCQYQ VTTTSQARMA  60
LKMLRENRDR FDLIISDVHM PDMDGFKLLE LVGLEMDLPV IMLSANSDTK LVMKGISHGA  120
CDYLVKPVRL EELRNVWQHV IRRKKSDSKS QNKSNDQDKS YQGGGEGGQG QSLSSNADQN  180
GKLNKKRKDE DDETDENGSD NEDPGAQKKA RVVWSIELHR KFVAAVNQLG IEKAVPKRIL  240
DLMNVEGLTR ENVASHLQAL KYRLYLKRIS SVATQQANMV AAYGGRDSAY MRMGSLDGLG  300
DFRTAVGSGR YAHATLSSYN SGAILGRLNS AAGISLRNLA ATPQLQTSHG QNLSNSISAF  360
AKLNPNIPPA SQNASLFQGI PPSLELDQLQ QSRGSTHIPL DESRLLTADV LGCSNNSLSN  420
VPNNPLLLQG NSQQPLTAGG FGDQNSLNMT PFRSDSFNTG INGSSNILNH GRSNENWQNS  480
IQLSKFQSSS FPLTESFINS HLPQNSVRDD NSSAAPHLQN SSPDFSSTTS VSPPFEDSRG  540
EIQYREGRAG AVQSMNQTPS QAWADNKQQY SQNSNNAFGN LSSQVPNNGS MASLSHSMNR  600
SNESFGRRMD MSLIGRSNGG SSTLVQHTEN ENLIPDTRTR SNEDYLLEPT KQQVGFAPQG  660
FDTLDELVGS MKREHDGGML EEEQYVFVDY PFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23206270264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343681.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotQ6K8X61e-138ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLM0ZUD30.0M0ZUD3_SOLTU; Two-component response regulator
STRINGXP_009599949.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-116response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]