PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00578g04017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 262aa    MW: 29475.7 Da    PI: 4.6831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00578g04017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+ +++++G+g +W t ++++g++R++k+c++rw++yl
  Peinf101Scf00578g04017.1 14 RGPWSPEEDAKLKAYIELHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.674966IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-201261IPR009057Homeodomain-like
SMARTSM007176.7E-131364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
SuperFamilySSF466893.86E-191588IPR009057Homeodomain-like
CDDcd001673.41E-101662No hitNo description
Gene3DG3DSA:1.10.10.604.6E-66287IPR009057Homeodomain-like
PROSITE profilePS500904.3216397IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKAYIE LHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEEEDNIIC SLYISIGSSQ DINAYSWPPQ PLLFSSLVAP TNDYQQSQSS  120
ENSHNFQYST EVSAQFDPSK FSQSSAFVNP LNGNTCNSLS CYYPISNGVI TNSFQEYNNY  180
ISVGLDHDVL NVSNHQQVDQ SVIEMVNSSS TIISTTSPEI STSWEELSPI VYPPSVSNFE  240
IQQEISPYYV FEEPRYLGLL KQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362138.11e-62transcription factor RAX3-like
TrEMBLA0A1J6JYK56e-58A0A1J6JYK5_NICAT; Transcription factor rax3
STRINGXP_009790050.11e-57(Nicotiana sylvestris)
STRINGPGSC0003DMT4000551488e-58(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-56myb domain protein 84