PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00578g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22602.9 Da PI: 7.4499 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.6 | 1.6e-18 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 i++k r+v+fskR++ ++KKAe LS L+ ae av++fs++gk y y+s Peinf101Scf00578g02001.1 16 LIKSKEARYVSFSKRKASLFKKAEDLSNLTKAELAVLLFSPSGKTYSYCS 65 69**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.446 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-22 | 8 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-15 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-18 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-15 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-15 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MERKVSKGRQ KIEMKLIKSK EARYVSFSKR KASLFKKAED LSNLTKAELA VLLFSPSGKT 60 YSYCSTSIEE ITNKFFQWKQ DESNDDESDH NNIDKLLDVY KDLCDEIKII NDQEKSRRWR 120 YKIIHPDSEI PPDKNMLDRL VECKSQLDIL KKMAIHLQEL MPSTSESVPF TSAKPHLSID 180 LNVLPGLDEG ECSGTK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240978.1 | 3e-54 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
STRING | PGSC0003DMT400033861 | 5e-55 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-17 | AGAMOUS-like 29 |