PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00577g09014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HB-other

Protein Properties

Length: 1660aa MW: 186740 Da PI: 6.6164

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00577g09014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.8e-19	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL+ klgLt+rq ++WF+ rR k+k+ Peinf101Scf00577g09014.1 19 PKRQMKTPFQLETLEKAYAMETYPSEATRAELSVKLGLTDRQLQMWFCHRRLKDKN 74 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-18	4	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.71E-16	11	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.066	15	75	IPR001356	Homeobox domain
SMART	SM00389	9.8E-18	17	79	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-16	19	73	IPR001356	Homeobox domain
CDD	cd00086	7.86E-14	20	75	No hit	No description
SMART	SM00571	1.7E-19	500	559	IPR018501	DDT domain
PROSITE profile	PS50827	15.486	500	559	IPR018501	DDT domain
Pfam	PF02791	8.9E-16	502	556	IPR018501	DDT domain
Pfam	PF05066	1.1E-12	681	748	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.7E-6	865	908	IPR028942	WHIM1 domain
Pfam	PF15613	7.7E-13	1037	1109	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1660 aa Download sequence Send to blast
MGGSEGEGNK NLSEGPKKPK RQMKTPFQLE TLEKAYAMET YPSEATRAEL SVKLGLTDRQ 60 LQMWFCHRRL KDKNTLGGSE KKPHSAGSGG KRILMESPRE DFMVAEAASD RGSGSASGSG 120 SSRFDDGDGM PTPPVRYYES PRRAMERRVI ACIEAQLGEP LREDGPILGV EFDEVPPGAF 180 GIPIETTERR DRYRHSYDSK LYGPYDANKV NAGSALSISS ALTSGHREPA EPKIVSDKYG 240 QTAALCRYDP PVDGPSKNFP IMQGNGHFIR EYGVEGQSIN IMSQQSRQGR FPSSPRDNDV 300 VPNNEDILQL DRKRKIEEAR IGKDVQVNEK RMRKELEKQD LLRRKREEQM RKEMEKQDRE 360 RRKEEQRLIR EQQRQEERFQ REEKREMERR ERFLQKELLR AERKKQKEEL RKERDAAKQK 420 VAMERAMARR IAKESMELIE DERLELMELA ASSKGLPSIA SLDYDTLQNL EAFRESLCEF 480 PPKSVQMKKP FSIQPWSASD DNIGNLLMAW RFCLNFADIL GLWPFTLDEF VQAFHDYDSR 540 LLAEMHISLL KLIVKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY LWGFDIRNWQ 600 KHLNPLTWPE VLRQFALSAG FGPPLKKKRD RVGLNDSDET KGCEDIVSTL RSGSAAENAV 660 AIMQEKGFMQ QRKSRHRLTP GTVKFAAYHV LALEGDKGMN VLELADRIQK SGLRDLSTSK 720 TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IIAAAKEKIQ RYANGFLAGQ 780 NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCR VLDTCLLNGK SKPSVEVAQQ 840 IGVDVVGIEG STPSQECSEI DESKGGEPWV QGLTEGEYSD LCVEERLNAL VALIGIANEG 900 NSIRVILEDR LDAANALKKQ MWAEAQLDKR RFKEETINKY NDSSFNAVVE GSQSPLGFPN 960 NKNQGASPAT LVKDEPGVVA DNVQNPFESV PAEKSSVAQE TFMGQFSIQP SANTAERSRM 1020 QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLCVASGSSQ DPGSGRIFVE SPNGRWRLID 1080 TVEAFDCLLA SLDTRGIRES HLHIMLQKIE VSFKERVRHN MSHGDIISKY ENECRNESSA 1140 ASSSSPASGS GAVSLSSTIY GTRSDSWETS SSFKIELGRN EEEKQNALKR YQSFQVWMWR 1200 ECLSSSILCA MQYGKKRCLP LLGICSQCLD SYSSEEGICP CRNKMIGKVD MNAEFSEQAM 1260 NSADKLKIDY NNLVVSNSGS LRVRLVKALL SFLELYVPSE ALQSSWTEDS RKTWGMKLQK 1320 SLSPEDLLQI LTQLEGVIKR DYLLADYETA EELMGLCALA KNAACESTYP GSVPQLQWIP 1380 QTGAAVAIRL LELDASIFYD PQQKMETELK NKAEGLPKPS LGYSSVKDLL KLEPTEVVPN 1440 GPLREENWDY LSNLPSSSSR QVVRARGGGR PRVRLQKGAA SKVPESGRAV VRPTETLTQV 1500 LIKQGETHGQ RHGRGRRTVR RRRIEKKIVE EIQPDYLGSK GSRLSLVVSP RKHGREEFDI 1560 NVDRIEATND DSISMEAMRI RMIMPLMQMT TMIMMTMIMS MIIDTEAMAK IWKDMLTWMM 1620 MTQIGTGLSM RIKMIEVAKI FRGTLDNHNI SLMVDRQSTE

Sequence ? help Back to Top

Protein Sequence Length: 1660 aa Download sequence Send to blast

MGGSEGEGNK NLSEGPKKPK RQMKTPFQLE TLEKAYAMET YPSEATRAEL SVKLGLTDRQ  60
LQMWFCHRRL KDKNTLGGSE KKPHSAGSGG KRILMESPRE DFMVAEAASD RGSGSASGSG  120
SSRFDDGDGM PTPPVRYYES PRRAMERRVI ACIEAQLGEP LREDGPILGV EFDEVPPGAF  180
GIPIETTERR DRYRHSYDSK LYGPYDANKV NAGSALSISS ALTSGHREPA EPKIVSDKYG  240
QTAALCRYDP PVDGPSKNFP IMQGNGHFIR EYGVEGQSIN IMSQQSRQGR FPSSPRDNDV  300
VPNNEDILQL DRKRKIEEAR IGKDVQVNEK RMRKELEKQD LLRRKREEQM RKEMEKQDRE  360
RRKEEQRLIR EQQRQEERFQ REEKREMERR ERFLQKELLR AERKKQKEEL RKERDAAKQK  420
VAMERAMARR IAKESMELIE DERLELMELA ASSKGLPSIA SLDYDTLQNL EAFRESLCEF  480
PPKSVQMKKP FSIQPWSASD DNIGNLLMAW RFCLNFADIL GLWPFTLDEF VQAFHDYDSR  540
LLAEMHISLL KLIVKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY LWGFDIRNWQ  600
KHLNPLTWPE VLRQFALSAG FGPPLKKKRD RVGLNDSDET KGCEDIVSTL RSGSAAENAV  660
AIMQEKGFMQ QRKSRHRLTP GTVKFAAYHV LALEGDKGMN VLELADRIQK SGLRDLSTSK  720
TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IIAAAKEKIQ RYANGFLAGQ  780
NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCR VLDTCLLNGK SKPSVEVAQQ  840
IGVDVVGIEG STPSQECSEI DESKGGEPWV QGLTEGEYSD LCVEERLNAL VALIGIANEG  900
NSIRVILEDR LDAANALKKQ MWAEAQLDKR RFKEETINKY NDSSFNAVVE GSQSPLGFPN  960
NKNQGASPAT LVKDEPGVVA DNVQNPFESV PAEKSSVAQE TFMGQFSIQP SANTAERSRM  1020
QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLCVASGSSQ DPGSGRIFVE SPNGRWRLID  1080
TVEAFDCLLA SLDTRGIRES HLHIMLQKIE VSFKERVRHN MSHGDIISKY ENECRNESSA  1140
ASSSSPASGS GAVSLSSTIY GTRSDSWETS SSFKIELGRN EEEKQNALKR YQSFQVWMWR  1200
ECLSSSILCA MQYGKKRCLP LLGICSQCLD SYSSEEGICP CRNKMIGKVD MNAEFSEQAM  1260
NSADKLKIDY NNLVVSNSGS LRVRLVKALL SFLELYVPSE ALQSSWTEDS RKTWGMKLQK  1320
SLSPEDLLQI LTQLEGVIKR DYLLADYETA EELMGLCALA KNAACESTYP GSVPQLQWIP  1380
QTGAAVAIRL LELDASIFYD PQQKMETELK NKAEGLPKPS LGYSSVKDLL KLEPTEVVPN  1440
GPLREENWDY LSNLPSSSSR QVVRARGGGR PRVRLQKGAA SKVPESGRAV VRPTETLTQV  1500
LIKQGETHGQ RHGRGRRTVR RRRIEKKIVE EIQPDYLGSK GSRLSLVVSP RKHGREEFDI  1560
NVDRIEATND DSISMEAMRI RMIMPLMQMT TMIMMTMIMS MIIDTEAMAK IWKDMLTWMM  1620
MTQIGTGLSM RIKMIEVAKI FRGTLDNHNI SLMVDRQSTE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016440636.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1S3XL25	0.0	A0A1S3XL25_TOBAC; homeobox-DDT domain protein RLT1-like
STRING	XP_009613460.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1