PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00576g03024.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 529aa MW: 58839 Da PI: 5.1996

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00576g03024.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.2	1.6e-114	161	522	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++L++cA+av++++l+ a+ l+ l+ la+++ + +++a+yf++AL++r++++ + +++ s ++ l +f+++ Peinf101Scf00576g03024.1 161 TTLMACADAVQQNNLNVADILVRDLKMLAAQQFGAKKKVATYFAQALNQRIHGT--NQQHIVDYSY-----YTDDL-LWMIFYKT 237 68*************************************************2..1122222222.....23333.3458 PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 +P++kf++l+ NqaIl+a+++++rvH+iDf++++GlQWpaL++aLa Rp+gpp + +T++g+ +s++ ++ +++g +LakfAe++ Peinf101Scf00576g03024.1 238 CPYIKFAYLASNQAILDAFANSNRVHVIDFSLKEGLQWPALMEALARRPGGPPAFWLTAIGPLRSNNINNFQQIGGKLAKFAETV 322 ********************************************************************************* PP GRAS 173 gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 gv+fef+ +++++l+d++ L+++p +++aVn+v++lh+ l+ s+++e+ +L+ +k+++Pk+v+++eqea+hn++ +++ Peinf101Scf00576g03024.1 323 GVEFEFREILVNSLADVDATVLNIRPssVDVVAVNSVFELHHALSTSGTIEK----LLNSIKEMQPKIVTITEQEANHNGHALVD 403 **********************999***********99999999....************************* PP GRAS 256 rflealeyysalfdsl.eak.lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 rf ea +yys++f+s+ +++ + ++s +vE+ lgr+i nvvaceg+er+erhetl++W+ r+++aGF v+l++++++qa+ Peinf101Scf00576g03024.1 404 RFKEAWDYYSTMFESMeNSEvMQPNSPYSEMVEKY-LGRQINNVVACEGTERVERHETLSQWQVRMNSAGFVRVHLRSNTYNQAR 487 ************6444356666888888887.********************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ll +++ gy+ve ++g++ l W++rpL+++SaW+ Peinf101Scf00576g03024.1 488 SLLLQHSRAGYKVEANDGCM-LSWNSRPLIAISAWQ 522 **********999986.8***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.837	133	503	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-112	161	522	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MNRSSSEMSS IESMMEDEDS YLSNTDAIIY GTSDHSGWGG DSMISDPNIA LSTTSTDDHY 60 QLQISIAAGD GGDASTIVSS VSSSSWFMNN NKQSDYQQET RVFFVDYRAT SGFAICQNSH 120 KEELEGPESS NRLKSCAGLE LGLTLNIAGA LNNGTRGRLF TTLMACADAV QQNNLNVADI 180 LVRDLKMLAA QQFGAKKKVA TYFAQALNQR IHGTNQQHIV DYSYYTDDLL WMIFYKTCPY 240 IKFAYLASNQ AILDAFANSN RVHVIDFSLK EGLQWPALME ALARRPGGPP AFWLTAIGPL 300 RSNNINNFQQ IGGKLAKFAE TVGVEFEFRE ILVNSLADVD ATVLNIRPSS VDVVAVNSVF 360 ELHHALSTSG TIEKLLNSIK EMQPKIVTIT EQEANHNGHA LVDRFKEAWD YYSTMFESME 420 NSEVMQPNSP YSEMVEKYLG RQINNVVACE GTERVERHET LSQWQVRMNS AGFVRVHLRS 480 NTYNQARSLL LQHSRAGYKV EANDGCMLSW NSRPLIAISA WQLAPPSLG

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MNRSSSEMSS IESMMEDEDS YLSNTDAIIY GTSDHSGWGG DSMISDPNIA LSTTSTDDHY  60
QLQISIAAGD GGDASTIVSS VSSSSWFMNN NKQSDYQQET RVFFVDYRAT SGFAICQNSH  120
KEELEGPESS NRLKSCAGLE LGLTLNIAGA LNNGTRGRLF TTLMACADAV QQNNLNVADI  180
LVRDLKMLAA QQFGAKKKVA TYFAQALNQR IHGTNQQHIV DYSYYTDDLL WMIFYKTCPY  240
IKFAYLASNQ AILDAFANSN RVHVIDFSLK EGLQWPALME ALARRPGGPP AFWLTAIGPL  300
RSNNINNFQQ IGGKLAKFAE TVGVEFEFRE ILVNSLADVD ATVLNIRPSS VDVVAVNSVF  360
ELHHALSTSG TIEKLLNSIK EMQPKIVTIT EQEANHNGHA LVDRFKEAWD YYSTMFESME  420
NSEVMQPNSP YSEMVEKYLG RQINNVVACE GTERVERHET LSQWQVRMNS AGFVRVHLRS  480
NTYNQARSLL LQHSRAGYKV EANDGCMLSW NSRPLIAISA WQLAPPSLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-49	159	522	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016490697.1	1e-173	PREDICTED: DELLA protein GAI-like
Swissprot	Q7Y1B6	1e-154	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A1S4BP73	1e-172	A0A1S4BP73_TOBAC; DELLA protein GAI-like
STRING	Solyc10g086380.1.1	1e-170	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-137	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]