PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00571g28002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 18661.4 Da PI: 9.8252 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa a+++a+++l+g Peinf101Scf00571g28002.1 21 CHFRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 71 689*******.**********883....5999**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.33E-31 | 21 | 79 | No hit | No description |
SuperFamily | SSF54171 | 4.58E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.076 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-35 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MVVHNSTMCG GSQTVRTFQE CHFRGVRKRP WGRYAAEIRD PWKKTRRWLG TFDTAEEAAL 60 AYDEAARSLR GPKAKTNFEL DPIATGPIAP PFSLMKPAFG SEKLPQWCFQ ALYGSGQENK 120 ITVASSEYTE YKIEGVGVVM NKHEKKTKSE KKPFLFDLNL PAPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 22 | 80 | 5 | 64 | ATERF1 |
3gcc_A | 4e-20 | 22 | 80 | 5 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB669078 | 1e-47 | AB669078.1 Nicotiana tabacum NtERF#074 gene for ethylene response factor #74, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788813.1 | 5e-67 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
Refseq | XP_016472543.1 | 5e-67 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
TrEMBL | A0A1U7XD61 | 1e-65 | A0A1U7XD61_NICSY; ethylene-responsive transcription factor 9-like | ||||
TrEMBL | R4WAR6 | 1e-65 | R4WAR6_TOBAC; Ethylene response factor #74 | ||||
STRING | XP_009788813.1 | 2e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14136 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-24 | ERF domain protein 12 |