PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00571g08001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 498aa    MW: 55029.6 Da    PI: 8.9564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00571g08001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-06103125123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cgk F r  nL+ H r H
  Peinf101Scf00571g08001.1 103 FVCEICGKGFQRDQNLQLHRRGH 125
                               89*******************88 PP
2zf-C2H211.60.00089179201123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H +t+
  Peinf101Scf00571g08001.1 179 WKCDKCSKIYAVQSDWKAHSKTC 201
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-7102125No hitNo description
PROSITE profilePS5015711.614103125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5103125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001167200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-7174199No hitNo description
SMARTSM00355180179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MYQESNKSQA AKQIYHQSNS GCFSLLESSS LSQAAMFSDE ASVSSNTRAN QNLANSVSPM  60
AQTISTQQPP QKIKKKRSLP GNPDPDAEVI ALSPKTLLAT NRFVCEICGK GFQRDQNLQL  120
HRRGHNLPWK LKQRNNKENR KKAYVCPEPT CIHHHPSRAL GDLTGIKKHF CRKHGEKKWK  180
CDKCSKIYAV QSDWKAHSKT CGTREYRCDC GTLFSRKDSF VTHRAFCDAL AEESARLSAN  240
SSLMHRAAAS TVANSSAEPS FHLNQSSSFI PFPTTQRHFA NPPPPPTTHI SLNQWDPQIP  300
LNDNPNPIIH PVPIIKTEPI HIPINSSSLP FYQTDSVFHN HSSFSIPSPQ LSATALLQKA  360
ATIGTVSHVN STMAHLNRTS LGHHVSVPLP KLSPDDYLGF GSENMSSHWQ KNENLTRDFL  420
GLTGDHHDHD HDCSGGGRSV MANGSGRNGV MVSYGNGNME FQKTLYERDN SVLLKHHPLG  480
FGFGAPAETS ASETWGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35175239367Zinc finger protein JACKDAW
5b3h_F1e-35175239367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129141KLKQRNNKENRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-134HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-134HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786203.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_016477693.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1S4AMN40.0A0A1S4AMN4_TOBAC; protein indeterminate-domain 2-like
TrEMBLA0A1U7X5S40.0A0A1U7X5S4_NICSY; zinc finger protein NUTCRACKER-like
STRINGXP_009786203.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-113C2H2 family protein