PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00565g07010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 694aa    MW: 76224.5 Da    PI: 7.049
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00565g07010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23121222199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Peinf101Scf00565g07010.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGD 203
                               89****************************996555555..89****************************************** PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++ l+v+++r+
  Peinf101Scf00565g07010.1 204 SIVFL--RAENGDLCVGIRRA 222
                               *****..4488999****997 PP
2Auxin_resp114.11.3e-37287370183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               a++ a+++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Peinf101Scf00565g07010.1 287 AVNLAASGQPFEVIYYPRASTPEFCVKASLVKTALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 370
                               68999*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-38111225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29113224IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-21120221No hitNo description
PfamPF023628.7E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112121223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21121223IPR003340B3 DNA binding domain
PfamPF065071.0E-32287370IPR010525Auxin response factor
PROSITE profilePS5174517.979606686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MITFVDSKDK VKDIEKCLDS QLWHACAGSM VQMPPVSSKV FYFPQGHSEH ACGNVDFRSS  60
IRIPSYIPCK VSAVKFMADP ETDEVFSKIR LIPVSRNEIE FDDDGVVGMN GSDSQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG  240
GNCMVPYGGF SSFLREDENK LMRNGNGSIS GSLMSKGKVK AESVVEAVNL AASGQPFEVI  300
YYPRASTPEF CVKASLVKTA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPIR  360
WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK LRLPQHPDFP  420
LDGHLPMPAF SGNHHLLGPN SPFGCLPDNT PAGMQGARHA QYGLSLSDLH LNKLQSSFFS  480
VGFPPLDQAA APPRPLNSPM IRKPCNGENI SCLLTMGNST HATKKSDIGK APQLVLFGQP  540
ILTEQQISLS CSGDTVSTVR TGNSSSDGNA DKIGNVSDGS GSALNQRGLT ERSPCDTFQS  600
EPNTEIGQCK VFMESEDVGR TLDLSLLGSY DELCRKLANM FGIDNLEMLN HVLYRDLTGT  660
VKQLGDEPFS DFMRTARRLT ILTDSSSDNV GIRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-81839141388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088546.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2VZR80.0A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBLA0A2G3BJ950.0A0A2G3BJ95_CAPCH; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]