PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00554g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24447.3 Da PI: 6.3683 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.1 | 3.1e-11 | 10 | 55 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ e d + +a + ++ g +W++Ia+ ++ g+tl ++k+++ Peinf101Scf00554g01004.1 10 VWSREQDIAFENALATHPEGsayRWERIAADVP-GKTLVEVKNHYEL 55 7********************************.***********75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.702 | 3 | 57 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 6 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.09E-10 | 6 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-8 | 7 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-8 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-8 | 11 | 57 | No hit | No description |
PROSITE profile | PS50090 | 5.541 | 85 | 138 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.98E-5 | 87 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 50 | 89 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTVAKSRSSV WSREQDIAFE NALATHPEGS AYRWERIAAD VPGKTLVEVK NHYELLLDDN 60 RKEEWDLSSL NSESNDGDKS TRADQERRKG IAWTEDEHRL FLLGLEKYGK ELLHKWPVMP 120 KNILRLNSMN KDRRRSSIHD ITSVSDGDVS VPQVPITGET IGAGAGGSSG RSNKQSTPTS 180 PLGVGMYEAT TFGQPVTGPL VSVVGTPVNL SAPNYMQYSF Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-44 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 1e-44 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572400.1 | 2e-88 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_027097519.1 | 2e-88 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 2e-60 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2G2ZGY6 | 7e-89 | A0A2G2ZGY6_CAPAN; Transcription factor DIVARICATA | ||||
STRING | Gorai.013G067600.1 | 8e-86 | (Gossypium raimondii) | ||||
STRING | PGSC0003DMT400065102 | 6e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-47 | MYB family protein |
Publications ? help Back to Top | |||
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