PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00549g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 42092.9 Da PI: 8.2126 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.2e-05 | 277 | 315 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Peinf101Scf00549g00014.1 277 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 315 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.28 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-5 | 275 | 319 | No hit | No description |
SuperFamily | SSF47459 | 7.85E-11 | 275 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-9 | 279 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEPANLHHHQ QQQYHQLQFQ DQLPLVISPS SSSSNSCYGV ATTSTHSTWT PCTILNSGGS 60 SLNGAINMTN SSDLLLRQQQ SSITQDFGFH WANTISSQLV KQENSLDSYP RFTQMLKSPS 120 SIEERELSEM NAKLLLGTLS SSSTGLQLYP GDDLLYSSNS STNRGRFSQI YPSINVSNLN 180 INQASLANSS SLDMNLQPLD LVNSTRYGGS FSQNYGLTNH FQHSSERPGD SSTSISSSFS 240 NGVPEAKRTS NMLELPKNAP KKSRVDSRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT 300 ASVLMEAIGY IKFLQNQVET LSVPYMKSSR NKTSRSMHGG AGEMNGNEEV KGDLRSRGLC 360 LVPLSCLTYV TEGGGGVWPP PNFAGGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009586806.1 | 0.0 | PREDICTED: transcription factor bHLH110 | ||||
Refseq | XP_016460036.1 | 0.0 | PREDICTED: transcription factor bHLH110-like | ||||
TrEMBL | A0A1S3Z6M3 | 0.0 | A0A1S3Z6M3_TOBAC; transcription factor bHLH110-like | ||||
STRING | XP_009586806.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7533 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 2e-59 | bHLH family protein |