PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00540g07036.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Whirly
Protein Properties Length: 227aa    MW: 25231.6 Da    PI: 10.1007
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00540g07036.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.44.7e-62511891139
                    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 
                               sv+k+kaal+ ++++ptf+++dsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l++++ ++sceffhdp++ +s
  Peinf101Scf00540g07036.1  51 SVFKGKAALSAEPRMPTFSKMDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGNRDSCEFFHDPSMLSS 135
                               79*********************************************************************************** PP

                    Whirly  86 neGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                               n+G+vrk+l+++P ++GsG+fv+lsv n+ +k+n++f+vPv+ aef+v+r++++
  Peinf101Scf00540g07036.1 136 NAGQVRKSLSIKPNAEGSGYFVSLSVVNNNLKTNDRFTVPVTTAEFSVMRTAFS 189
                               ***************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.0E-7538206IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.73E-6444207IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.6E-5952186IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
NQLLHKNTPG EGVRDSIWQH AINTFAGYSN VRQNSVADAG KLQSRVFAPY SVFKGKAALS  60
AEPRMPTFSK MDSGGVKLNR RGVIMLTFWP SVGERKYDWE KRQLFALSAT EVGSLISMGN  120
RDSCEFFHDP SMLSSNAGQV RKSLSIKPNA EGSGYFVSLS VVNNNLKTND RFTVPVTTAE  180
FSVMRTAFSF ALPHIMGWDR FTNQPSEGIA QSPSKVVPQL MEAEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-116362071172StWhy2
3n1i_A1e-116362071172protein StWhy2
3n1j_A1e-116362071172Protein StWhy2
3n1k_A1e-116362071172protein StWhy2
3n1l_A1e-116362071172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2345040.0HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598355.11e-157PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
RefseqXP_016508343.11e-157PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X1
SwissprotD9J0341e-154WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S4D4S41e-155A0A1S4D4S4_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X1
STRINGXP_009598355.11e-156(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-92WHIRLY 2