PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00527g08008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17826.2 Da PI: 8.771 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.1 | 3e-20 | 3 | 51 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i++k r+v+fskR++ ++KKA ELS+L+ a++ v++fs++gk y+y Peinf101Scf00527g08008.1 3 LIKSKETRYVSFSKRKANLFKKADELSTLTRADIGVVLFSPSGKSYTYG 51 69*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-20 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-16 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.656 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-20 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-8 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-8 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MKLIKSKETR YVSFSKRKAN LFKKADELST LTRADIGVVL FSPSGKSYTY GSTNIEEIID 60 KFLQWKQDES DDDDDESDYD NVDKLLDVFK EFDDLHYAIV ALNELEKRRT RRYKIIHPSS 120 EIPPDKNRLV RVRSISGKIF TSSEILHFRT RI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541016.1 | 3e-41 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2G2WVH6 | 1e-41 | A0A2G2WVH6_CAPBA; Uncharacterized protein | ||||
STRING | XP_009779179.1 | 2e-39 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-19 | AGAMOUS-like 29 |