PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00514g05005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 318aa    MW: 35721.1 Da    PI: 6.1895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00514g05005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.71e-3244154199
                               EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                               f+k ltpsdv+k++rlv+pk++ae++            +++ e++  l++ede g++W+++++y+++s++yvltkGW++Fvk+++
  Peinf101Scf00514g05005.1  44 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgninnnnnNESGEKGLLLSFEDECGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKR 128
                               99****************************99999877333347789************************************** PP

                               --TT-EEEEEE-SS.SEE..EEEEE-S CS
                        B3  74 LkegDfvvFkldgr.sefelvvkvfrk 99 
                               L++gD+v+F+++ r ++++l+++++r+
  Peinf101Scf00514g05005.1 129 LDAGDIVLFERH-RlDGESLFIGWRRR 154
                               **********75.559999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4233162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-3139154IPR015300DNA-binding pseudobarrel domain
CDDcd100178.92E-3042145No hitNo description
PROSITE profilePS5086314.18444155IPR003340B3 DNA binding domain
SMARTSM010191.9E-2744155IPR003340B3 DNA binding domain
PfamPF023629.9E-3044155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MFGFNLNNTN NEEDEELEEQ QISTEEKDQD FEREEQEIPK EHLFEKPLTP SDVGKLNRLV  60
IPKQHAEKYF PLSGNINNNN NNESGEKGLL LSFEDECGKT WRFRYSYWNS SQSYVLTKGW  120
SRFVKEKRLD AGDIVLFERH RLDGESLFIG WRRRNAIPST SNITTAVHES IAVAPPPGIM  180
GGGGGSGWAH VYYGGSGGHP YPGAGLPYQP DCLHAGRGAM QNQTIPASVN NTRRQVRLFG  240
VNLECEADES SWSEPPPTPD GGGSSTSSHH HHQGQGQASQ HYYQYQFQYS KPQVAVPAAA  300
SSYNNNHHNH MVHSIFYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49401574116B3 domain-containing transcription factor NGA1
5os9_B2e-49401574116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776788.11e-162PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8RYD33e-66Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A1U7WDQ71e-161A0A1U7WDQ7_NICSY; B3 domain-containing protein At2g36080-like
STRINGXP_009776788.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.14e-64B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]