PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00506g14002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 650aa MW: 73950.3 Da PI: 9.0445 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.4 | 5.7e-07 | 462 | 503 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE +ll ++ ++++g +W+ I++++g++Rt +++ Peinf101Scf00506g14002.1 462 KPWSKEEIDLLRKGMLKYPKGtsrRWEVISEYIGTRRTVEEI 503 69********************************99998775 PP | |||||||
2 | Myb_DNA-binding | 27.2 | 8.8e-09 | 594 | 637 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ ++ l++a k ++++ +W+++a ++ g+t +qck ++ Peinf101Scf00506g14002.1 594 WSAVQEKALIQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 637 ********************************.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 1.22E-20 | 75 | 175 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.1E-7 | 81 | 99 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 2.7E-20 | 94 | 196 | IPR001623 | DnaJ domain |
SMART | SM00271 | 2.1E-16 | 96 | 171 | IPR001623 | DnaJ domain |
CDD | cd06257 | 3.72E-13 | 97 | 168 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.395 | 97 | 179 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.4E-16 | 97 | 176 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.1E-7 | 120 | 135 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.1E-7 | 151 | 171 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 156 | 175 | IPR018253 | DnaJ domain, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 457 | 503 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 6.695 | 459 | 514 | IPR017884 | SANT domain |
SMART | SM00717 | 3.3E-5 | 460 | 513 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.89E-7 | 462 | 505 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-6 | 462 | 502 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.46E-4 | 463 | 503 | No hit | No description |
PROSITE profile | PS51293 | 9.379 | 589 | 644 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-8 | 590 | 642 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-9 | 592 | 647 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 594 | 636 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-7 | 594 | 636 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.25E-6 | 594 | 640 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MASRSRVRLI SYSEEIINGE PIYISSNCCP IKAHKYEPAG LAFHSAALRL IGHVEKEDTK 60 DSKENVPNDK EQAHTYSSES YSSKGKKKSS TGEKIQDHYA LLGLSHLRYL ASEDQIRKSY 120 RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE 180 FDDEIPAECA PQDFFKVFGP AFLRNGRWSV TQSVPSLGDE NTPLKEVDNF YNFWYGFKSW 240 REFPHADEFD VEQAESRDHK RWMERQNAKL SEKARKEEAV RVRSLVDNAY KKDPRILGRK 300 EAEKAEKQRK KEAKVLAKKL KEEEAARIAE EEKRKKEEEE RKAAEAASQQ KKVKEKEKKL 360 LRKERSRLRT LAAPVLSQHL LGVTEDDVEG LCMSLDIEQL RNLCDKAGGK SELEIAELLR 420 EALGHEHDLK YENKDGVSKS QQNGSLEGKK QVPLMSSEKR EKPWSKEEID LLRKGMLKYP 480 KGTSRRWEVI SEYIGTRRTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST 540 RAEVEGVENS SKPESGSAKL ADSQESPSQN TNSQNTEDAP AANGVSSSSD SDIWSAVQEK 600 ALIQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK ENFRNKKSAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 2e-18 | 186 | 296 | 13 | 123 | Zuotin |
5dje_B | 2e-18 | 186 | 296 | 13 | 123 | Zuotin |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538304.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_016538305.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_016538306.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
TrEMBL | A0A2G2W705 | 0.0 | A0A2G2W705_CAPBA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400008515 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9557 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 1e-120 | DnaJ domain ;Myb-like DNA-binding domain |