PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00504g10001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 295aa MW: 32753 Da PI: 6.9044

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00504g10001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Peinf101Scf00504g10001.1 103 FSCSFCKREFSTSQALGGHQNAH 125 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.31E-6	99	130	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-4	101	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.552	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDMYVVKSCS SEASDISATS EDLEPNTKKM KQKVREGSHH ELKPQELSSA CVLLDLNVYN 60 NGYNKNNYSD LELNLFNPTS SPASESSNEA TPKKSCSTET RVFSCSFCKR EFSTSQALGG 120 HQNAHKQERA LSKRGNGMVD VVSPFGPPNY YPHYNPYSNF NSHMPFHTSF TSRSSLGVHD 180 AAGSSAIRKP SSYQPWSSYF SGYNYRFSPE KLSSFFSVEN LPGNKMDDKI GIGAASLENS 240 LKFDNKSSAK GLSLRDSPVN VDHNHDGNNY SKMGFGEEDA HKNQEESMLD LNLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600727.2	1e-108	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3X541	1e-105	A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7XKL7	1e-105	A0A1U7XKL7_NICSY; zinc finger protein 4
STRING	XP_009600727.1	1e-108	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	3e-19	zinc finger protein 3