PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00500g16039.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 396aa    MW: 45857.8 Da    PI: 6.7859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00500g16039.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-16172218148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +l+++v+++G + W+ Ia+++  gR +kqc++rw+++l
  Peinf101Scf00500g16039.1 172 KGQWTIEEDRILIHLVEKFGIRKWSQIAQMLK-GRIGKQCRERWHNHL 218
                               799****************************9.*************97 PP
2Myb_DNA-binding43.86e-14224259845
                               HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               Ed +l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Peinf101Scf00500g16039.1 224 EDRILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 259
                               9**************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.388167222IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-22167223IPR009057Homeodomain-like
SMARTSM007171.1E-14171220IPR001005SANT/Myb domain
SuperFamilySSF466893.27E-29172263IPR009057Homeodomain-like
PfamPF002492.1E-15172218IPR001005SANT/Myb domain
CDDcd001671.37E-13175218No hitNo description
SMARTSM007171.2E-8223264IPR001005SANT/Myb domain
PROSITE profilePS5129415.147223266IPR017930Myb domain
PfamPF002498.9E-13224259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-16224260IPR009057Homeodomain-like
CDDcd001674.73E-10224262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDDDFSISSK DYLKDFEHLD LNFSIPTFNN PDHNFMIETN SYDPFDPFSN IEDDLGDFNF  60
CYELKPFEEN TGASSSMVVK NYGVDEFSIN KENSMDVNMY NEKSFSSVCY EDVKPLNFVV  120
PDESSSCVTA DINGSCKEIG GRKNKKMKRN DNNLSTSMKK PSRGRKKSKS AKGQWTIEED  180
RILIHLVEKF GIRKWSQIAQ MLKGRIGKQC RERWHNHLRP DIKEDRILIE AHAEVGNKWA  240
EIAKRLPGRT ENSIKNHWNA TKRRQFSRRK CRTKWPRPSS LLQNYIKSLN LEKGSSKKIS  300
HDTNPNAKIM KVSTKLEPVD NFCQGQVHDY DFSEVPEFAL DDKLFDDIPI GPSNMDDNIE  360
KCMGLEMIPY DFPTLMQGEV NKEIDLMEMI SRVNKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-391722654104C-Myb DNA-Binding Domain
1msf_C4e-391722654104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2192101e-79AC219210.1 Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence.
GenBankAC2329441e-79AC232944.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 6 clone LE_HBa-24A16, complete sequence.
GenBankHG9755181e-79HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603629.10.0PREDICTED: transcription factor MYB98-like
TrEMBLA0A1J6IMW21e-175A0A1J6IMW2_NICAT; Transcription factor myb98
STRINGXP_009603629.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-71myb domain protein 98