PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00500g10037.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 342aa    MW: 39431.8 Da    PI: 7.4219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00500g10037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.8e-101691789
                              E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                              ++p +fa+++ + + ++   + le ++g+ Wev++    + ++++l+kGW++F +   +  g f+vF ++g s+
  Peinf101Scf00500g10037.1  1 SIPVDFASRYcE-NIQN--PVYLEVPDGEIWEVEV--VHSESQIWLAKGWQDFSDYYSISCGHFLVFGYNGCSR 69
                              69********53.4234..5***************..888888*************************987555 PP
2B348.81.3e-15167248489
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+k   l +p k a+++ ++  + ++l+l+ +   sW+vk+ ++ ++ r  +  GWkeFv +n+Lk gD+++F++++ +
  Peinf101Scf00500g10037.1 167 LMQPSYVSKPYSLFVPVKIARKYFLE--NCRDLVLRVPGRGSWSVKCAFETTKAR--IHYGWKEFVLDNKLKFGDVCIFEVIKGT 247
                               6789*******************887..4569***************88777766..788********************88743 PP

                               E CS
                        B3  89 e 89 
                               +
  Peinf101Scf00500g10037.1 248 K 248
                               3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.012178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-12171IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.48173IPR003340B3 DNA binding domain
CDDcd100171.45E-8170No hitNo description
SuperFamilySSF1019363.14E-13270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-22156255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19157256IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-17162256No hitNo description
SMARTSM010193.0E-13164258IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07164258IPR003340B3 DNA binding domain
PfamPF023624.4E-13166247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
SIPVDFASRY CENIQNPVYL EVPDGEIWEV EVVHSESQIW LAKGWQDFSD YYSISCGHFL  60
VFGYNGCSRF NDSIENTGKC PLGQSRKRHR EEEDSEDDDS VYMLTERMEV EKSEEDVASP  120
SFTSRREQKQ QCEIVYDEKK TLMDKESSIA YQRAKKFKSE NPVILSLMQP SYVSKPYSLF  180
VPVKIARKYF LENCRDLVLR VPGRGSWSVK CAFETTKARI HYGWKEFVLD NKLKFGDVCI  240
FEVIKGTKLI DVTIFPAAES TSMHKISGRK VPEVSDNSAP CSQSKIVHTK KLKQWRGGSY  300
GLNSKIKEEY GEIEHPVEIL GHCPLGAAKE KDWKRRQRVL FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1313925924144B3 domain-containing transcription factor VRN1
4i1k_B1e-1313925924144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230732.11e-124PREDICTED: uncharacterized protein LOC109211634 isoform X1
RefseqXP_019230742.11e-124PREDICTED: uncharacterized protein LOC109211634 isoform X3
TrEMBLA0A1J6IMU61e-122A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009760928.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-16related to vernalization1 1