PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00500g07031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Dof | ||||||||
Protein Properties | Length: 472aa MW: 52151.8 Da PI: 4.922 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.2 | 2.7e-36 | 120 | 179 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Peinf101Scf00500g07031.1 120 PDKILPCPRCNSVDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNF 179 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 117 | 177 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-30 | 122 | 178 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.801 | 124 | 178 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 126 | 162 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MTCDSEIKLF GKILPVIFSD QYSGAGDSEV VNDEESDSID YQNQEVEKDD VALEFSEGKA 60 EEEDENQMME ESENVKTSLE SENSHGTPTE EDPQTVKSSE TENQQNNAIN SQQKSNLTKP 120 DKILPCPRCN SVDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG AGRRKNKNFA 180 SQYRRMSIPE GLLAAAGIEL PNGFQHQMLK PNGTVLSFGP DLPLSESMTS ALTQAEERAP 240 DVIQNGFYKI EHKNSSCKGG ENGDDCSRGS SITTSNTMVG EGKSNPHEAV MHNASSFSPP 300 VPCLHGVPWP FPWNAVVPMS AISPIGFPMP FYPAPYWNCS VPPWSIPWLS PPPQPENEKA 360 SNCAPNSALG KHSREGDLLK PNNSDGKETP EQRNSERTIL VPKTLRIDDP EEAAKSSIWS 420 TLGIKYDSAS RGKFFKALQP KSDDKDNRTN TSPVLHTNPA ALSRSLIFQE KA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761438.1 | 0.0 | PREDICTED: cyclic dof factor 3-like | ||||
Refseq | XP_016484450.1 | 0.0 | PREDICTED: cyclic dof factor 3-like | ||||
TrEMBL | A0A1S4B676 | 0.0 | A0A1S4B676_TOBAC; cyclic dof factor 3-like | ||||
TrEMBL | A0A1U7V4X6 | 0.0 | A0A1U7V4X6_NICSY; cyclic dof factor 3-like | ||||
STRING | XP_009761438.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 2e-81 | cycling DOF factor 3 |