PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00500g02026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YB | ||||||||
Protein Properties | Length: 549aa MW: 59942.6 Da PI: 4.8021 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 51.4 | 2.6e-16 | 2 | 65 | 21 | 84 |
NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 lP + ++++d+++++ +c +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ Peinf101Scf00500g02026.1 2 LPPDVRVARDTQDLLIDCCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGEYIEEVY 65 8999********************************************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-28 | 2 | 111 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.49E-26 | 3 | 114 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-12 | 4 | 52 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MLPPDVRVAR DTQDLLIDCC VEFINLISSE SNEVCNREDK RTIAPEHVLK ALEVLGFGEY 60 IEEVYGAYEQ HKLETMDTGR AGKSTNAAEM TEEEALAEQQ RMFAEARARM NGGVTVPPKQ 120 QDSESEQQRM LAEARARMNG GVTVPPKQQV SESEQPKMFA EAPARMNGGV TVPPKQQDSD 180 AEQQRMFAEA HASKNVGVTV PQQDALAEQQ RMFAEACASI NGGVTVPPKQ QDALAEQQRM 240 FAEACARMNG GVTVPPKQQD ALAEQQRMFA EACARMNGGV TVPPKQQDAL AEQQRMFAEA 300 CARMNGGVTV PPKQQDALAE QQRMFAEACA RMNGGVTVPP KQHDALAEQQ RMFAEACARM 360 NGGVTVPPKQ QDALAEQQRM FAEACARMNG GVTVPPKQQD ALAEQQRMFA EACARMNGGV 420 TVPPKQHDAL AEQQRMFAEA CARMNGGVTV PPKQQDALAE QQRMFAEACA RMNGGVTVSP 480 KQQDALAEQQ RLFAEAFARM NGSVTVIPKQ QDSEAEQQRM VAEARAGMNV GVTVPPKQQD 540 SEPEHNLNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-24 | 4 | 107 | 30 | 133 | Transcription Regulator NC2 beta chain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-46 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-46 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016471364.1 | 1e-141 | PREDICTED: protein Dr1 homolog | ||||
TrEMBL | A0A1S4A447 | 1e-140 | A0A1S4A447_TOBAC; protein Dr1 homolog | ||||
STRING | XP_009792100.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24898 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-60 | nuclear factor Y, subunit B13 |