PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00500g01048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23066.4 Da PI: 8.1851 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.8 | 6.8e-19 | 13 | 61 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i n+ r vtfskR +g++KKA+ELS+L +ae+a+i s+ g+++ + Peinf101Scf00500g01048.1 13 KKIANEKSRAVTFSKRYKGVFKKASELSILSGAEIAIIFQSQAGNVFAF 61 6899*****************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.778 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-25 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-23 | 6 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-16 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-18 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-16 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-16 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKKSQGRRKI EIKKIANEKS RAVTFSKRYK GVFKKASELS ILSGAEIAII FQSQAGNVFA 60 FGHPNPNVVI DRYLTDCGKS KAELEAEKQK KEIMTEEMKN KPIDEMGLEE LEDLMFALVE 120 LKKNVSMRAD ELAMINNSSM PSSSNSTLTT TNRFGIDEEE LLNQNFGFCS SSSIVPYDGF 180 NSRITEQEKE MAEIVKTSPF KKNIS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231377.1 | 1e-51 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7ERW3 | 3e-50 | A0A3Q7ERW3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106700.2.1 | 5e-51 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-22 | AGAMOUS-like 62 |