PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00495g03010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TALE
Protein Properties Length: 347aa    MW: 38824.9 Da    PI: 5.843
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00495g03010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092753092155
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               k +yps++++  LA+++gL+++q+ +WF N+R ++
  Peinf101Scf00495g03010.1 275 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 309
                               569*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2184128IPR005540KNOX1
PfamPF037902.2E-2386125IPR005540KNOX1
SMARTSM012561.4E-25139190IPR005541KNOX2
PfamPF037912.1E-21143189IPR005541KNOX2
SMARTSM011882.8E-8229250IPR005539ELK domain
PfamPF037895.7E-11229250IPR005539ELK domain
PROSITE profilePS5121311.174229249IPR005539ELK domain
PROSITE profilePS5007112.957249312IPR001356Homeobox domain
SMARTSM003891.2E-12251316IPR001356Homeobox domain
SuperFamilySSF466891.37E-19251326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-28254314IPR009057Homeodomain-like
CDDcd000863.86E-12261313No hitNo description
PfamPF059208.2E-17269308IPR008422Homeobox KN domain
PROSITE patternPS000270287310IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGGGNSSGN NTSCLMAYGD HENNNNAICP PPMMMMMMPP PPLSITNTSN NGESSSNNNN  60
NILFLPFMEN NSNTIHEDGN SCSSNIKAKI MAHPHYPRLL AAYINCQKIG APPEVVARLE  120
ELCATSAHMG RNGGGGGGGN NVIGEDPALD QFMEAYCEML TKYEQELSKP FKEAMVFLSR  180
IECQFKALTL ASTSESVAAF GEAMDRNGSS EEEVDVNNSL VDPQAEDREL KGQLLRKYSG  240
YLGSLKQEFM KKRKKGKLPK EARQQLLDWW TRHYKWPYPS ESQKLALAES TGLDQKQINN  300
WFINQRKRHW KPSEDMQFVV MDAAHPHYYI DNVLGNPFPM DMTPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244253LKQEFMKKRK
2250254KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4095430.0GQ409543.1 Petunia x hybrida HERMIT/STM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432572.10.0PREDICTED: homeobox protein knotted-1-like LET6
SwissprotO222991e-156LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLE2CZB60.0E2CZB6_PETHY; HERMIT/STM protein
STRINGXP_009613677.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-137KNOX/ELK homeobox transcription factor