PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00488g04015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 499aa MW: 56161.4 Da PI: 8.0372 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.8 | 2.4e-41 | 188 | 263 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvC+ hska++v+v+g+eqrfCqqCsrfh l fDe+krsCr+rLa+hnerrrk+q Peinf101Scf00488g04015.1 188 CQVYGCNKDLSSSKDYHKRHKVCDEHSKAAKVIVNGIEQRFCQQCSRFHLLGAFDEGKRSCRKRLAGHNERRRKPQ 263 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-34 | 182 | 249 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.111 | 185 | 262 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-38 | 186 | 267 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-32 | 188 | 261 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEPMNYALEG RGFLFHDNIE LPISRLATSR NLNHFCDVDR IMFGTSQEIS ENTEFGGSGI 60 ADILKKIEAS NPWSGGLGVE SDEVEPETAN RHNDSISLPI GLKLERLIDY GEARSCQSSK 120 GSSVLSLAES LLPLGKSQHG RREEPSIVYR EVKSNSPLVE NSAMYSLEPL LLGKRSRTTN 180 LHSQVPLCQV YGCNKDLSSS KDYHKRHKVC DEHSKAAKVI VNGIEQRFCQ QCSRFHLLGA 240 FDEGKRSCRK RLAGHNERRR KPQFDTHWGK LNSEYVVMAG AKLLDMTSQR RVPFLFPEIH 300 PGSPFCQERC EDRCKHIKLE ETPICISELD VAVTKKQSPT KNLQHHHGMR KQNSTKFHLG 360 ATVSVQELSA GQNSTCALSL LSAHSQYLLH HSENHCAYLK RDHSLEKICG ISDSRSFSSN 420 QLYPSEGSDI DKIAASTEVL RERHVRRSNS MNSKHGLCPE NGPTMDLVQL SSHLQRVEQL 480 KNAVQVKQED DIFSCFTNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 183 | 261 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073295 | 1e-139 | LC073295.1 Nicotiana tabacum NtabSPL6-7 mRNA for squamosa promoter binding protein NtabSPL6-7, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600444.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_018626210.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2K9ZXI1 | 0.0 | A0A2K9ZXI1_PETHY; Squamosa promoter binding-like protein 6b | ||||
STRING | XP_009600444.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6831 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-55 | SBP family protein |