PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00482g08063.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 463aa    MW: 51962.9 Da    PI: 5.0553
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00482g08063.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.4e-35121042103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d ++++++sws+++nsfvv++ +ef++++LpkyFkh+nf+SFvRQLn+Yg++kv+ +          weF+++ F
  Peinf101Scf00482g08063.1  12 FLSKTYDMVDDLSTNSVVSWSKSNNSFVVWNVSEFSRDILPKYFKHNNFSSFVRQLNTYGYRKVDPDC---------WEFANEGF 87 
                               9***************************************************************9987.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+k+ll++i r+k++
  Peinf101Scf00482g08063.1  88 VKGHKHLLKTISRRKNT 104
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.12E-327101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.8E-378101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-588101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEVVNGNSTP PFLSKTYDMV DDLSTNSVVS WSKSNNSFVV WNVSEFSRDI LPKYFKHNNF  60
SSFVRQLNTY GYRKVDPDCW EFANEGFVKG HKHLLKTISR RKNTQTQVHQ ETASRVQSVS  120
VGSCVEDGIE EEVERLKSDK SAHMEELSQL WQQQQATDHR LDNVGQRLHL MEQRQQQTMS  180
FLAKALQSPG FIAELFHQQN ESNRRIPGMN KKRRFPNQEE ENFGGKSVST LHDRQIVRYK  240
PLMNEAAIAM LQKILKNNAS GTNGFLTNHA RPFQNTLDTS GTSNRISDLT LPQLPTCSES  300
HLMSDLEIPY NSKISAIPEI QYSLSMVAGE AEDPQNPLNS RIGNVSSEMS GRGINALETF  360
GITDLKRSET EDMCIDTMQG SVDGVTSVDG FSEDTDVDAF LGKMPKLPGI NDIFWDRILS  420
ASPLTGDKHD IGSLALEDGL AKEEDVAGVQ ESDCDKLKAY DSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-23710124129Heat shock factor protein 1
5d5v_B7e-23710124129Heat shock factor protein 1
5d5v_D7e-23710124129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2110391e-168AC211039.2 Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence.
GenBankAC2192271e-168AC219227.1 Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence.
GenBankHG9755181e-168HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515948.10.0PREDICTED: heat stress transcription factor A-1-like isoform X2
TrEMBLA0A1S4DR970.0A0A1S4DR97_TOBAC; heat stress transcription factor A-1-like isoform X2
STRINGXP_009596927.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.24e-95heat shock factor 3