PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00482g03039.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 342aa MW: 38614.8 Da PI: 9.4115

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00482g03039.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.8e-06	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Peinf101Scf00482g03039.1 53 YVCEICNQGFQRDQNLQMHRRRH 75 9*********************9 PP
2	zf-C2H2	16.5	2.4e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Peinf101Scf00482g03039.1 130 WVCEKCSKGYAVQSDYKAHLKTC 152 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.31E-5	50	76	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	52	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	53	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS01359	0	55	135	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	94	124	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-4	121	151	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	60	130	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLNNNTNSSC DPFTSSENGN DCNKRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ 60 GFQRDQNLQM HRRRHKVPWK LLKRETPIVK KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF 120 RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACTF 180 NRPHTDQSQS FQPANCLSGT ASSPSPSSDT NLTTVPWPSF LISTPSPKKT FNCMATNTNA 240 MTKKHNLELQ LLTTTTSSSS PFDAYAEEAR KQAKRQIELA EQEYANAKRI RRQALGELEK 300 AQALKEQAIR QINSTLSQIT CHVCKEKFQA KKIVTTSIVP SL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLNNNTNSSC DPFTSSENGN DCNKRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ  60
GFQRDQNLQM HRRRHKVPWK LLKRETPIVK KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF  120
RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACTF  180
NRPHTDQSQS FQPANCLSGT ASSPSPSSDT NLTTVPWPSF LISTPSPKKT FNCMATNTNA  240
MTKKHNLELQ LLTTTTSSSS PFDAYAEEAR KQAKRQIELA EQEYANAKRI RRQALGELEK  300
AQALKEQAIR QINSTLSQIT CHVCKEKFQA KKIVTTSIVP SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-18	126	178	3	55	Zinc finger protein JACKDAW
5b3h_F	9e-18	126	178	3	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-152	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266207.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-132	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A314L0P0	0.0	A0A314L0P0_NICAT; Protein shoot gravitropism 5
STRING	XP_009765149.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-131	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]