PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00478g10014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 181aa    MW: 20234.6 Da    PI: 10.0088
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00478g10014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-1293137347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT eE++ ++ + k+lG+g+W+ I+++    Rt  q+ s+ qky
  Peinf101Scf00478g10014.1  93 PWTDEEHKNFLIGLKELGKGDWRGISKEYVPSRTSIQVASHAQKY 137
                               7**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.631722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.88986142IPR017930Myb domain
SuperFamilySSF466897.48E-1688141IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-1589140IPR006447Myb domain, plants
SMARTSM007172.4E-790140IPR001005SANT/Myb domain
CDDcd001679.76E-993138No hitNo description
Gene3DG3DSA:1.10.10.601.3E-993139IPR009057Homeodomain-like
PfamPF002491.9E-993137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTKKDARKCS HCGHSGHNSR TCNNNVKEVK LFGVRIDDNN HQGGDSKMKM KVEDELIRSK  60
SLGNMENDVN DLHNNVDTSC LSNGLKNRKE GIPWTDEEHK NFLIGLKELG KGDWRGISKE  120
YVPSRTSIQV ASHAQKYFNR IATPTNRKKH RSSVFDVQLN DSASKTAPST ATYSSSISKA  180
T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778274.13e-68PREDICTED: transcription factor MYB1R1-like
RefseqXP_016481927.13e-68PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A1S4AZ376e-67A0A1S4AZ37_TOBAC; transcription factor MYB1R1-like
TrEMBLA0A1U7WU956e-67A0A1U7WU95_NICSY; transcription factor MYB1R1-like
STRINGXP_009778274.11e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-41MYB_related family protein