PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00478g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 632aa MW: 71963.3 Da PI: 6.7781 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.8 | 8.5e-107 | 260 | 627 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 lL++cAea +s +++ ++L+++++++sp gd ++Rla +f++AL+ar ++ ++++ ++++ s+ l+a++++ + Peinf101Scf00478g02002.1 260 GLLTRCAEAAASYNNKTFVEVLKKIRQHSSPFGDGNERLAYCFANALEARFSGGETNTF--SNCKKI---LASDFLKAYQVYITA 339 68***************************************************333333..244444...488************ PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 +P+ ++s++ aN+ I + ++++++vHiiDf+i G+QWp+L++ ++ Rp+gpp+lRiT ++ p++g +e++eet++rL+++ + Peinf101Scf00478g02002.1 340 CPFKRMSNIFANKSIAKLTSEATKVHIIDFGILCGFQWPCLIHGISLRPGGPPKLRITEIDFPQPGfrPAERVEETRRRLENYSK 424 *****************************************************************9******************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++vpfe+++ +akr+++++l++L+++++E ++Vn+ ++l++++de+vs +++rd vL+l+k+++P+ + + +a +n++ F + Peinf101Scf00478g02002.1 425 RFNVPFEYKA-IAKRWDAITLKDLNIEKDEIVVVNCLYRLKNIPDETVSDKNPRDVVLNLIKQINPRYFAHGVVNAMYNASFFTT 508 **********.7************************************************************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 rf eal ++s+ fd++ea+++re+e r++ E+e++gr+i+nv+aceg+er+er e+++kW+ r + aGFk +pl+++++k++k+ Peinf101Scf00478g02002.1 509 RFREALFHFSSQFDMFEATMAREDEGRRMFEQEIFGRDIMNVIACEGTERVERPESYKKWQVRNQIAGFKRLPLNQDIVKEVKAK 593 ************************************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ + + + v+e+s+++++gWk+r ++++S+W+ Peinf101Scf00478g02002.1 594 VKMAYHKDFLVDEDSNWMLQGWKGRIMYALSVWE 627 *****888*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.996 | 232 | 607 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-104 | 260 | 627 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MNNTLFSLGD HNSCGGFEFG HHFLSASTTL SSNLGSGFSD EVVNGESRVV ESDYFDGVFK 60 YIHKMLMEED DLESRPCMFQ DCMALQAAEK SFYDALTQKN DFINDDCNAM TQFVESNFIT 120 SDLGGPQSFL EQQESLFCYP CDGALSDILL NPLNNNNHKA AANGGKKNHN QEDGDQYSSE 180 GRNPKQFAST YVAQPEHTEG YDKALLCPAM SPSFYEESTD SENVAWNKQK SCHLKESKRG 240 KPRGSKKGAK TTNEVVDLTG LLTRCAEAAA SYNNKTFVEV LKKIRQHSSP FGDGNERLAY 300 CFANALEARF SGGETNTFSN CKKILASDFL KAYQVYITAC PFKRMSNIFA NKSIAKLTSE 360 ATKVHIIDFG ILCGFQWPCL IHGISLRPGG PPKLRITEID FPQPGFRPAE RVEETRRRLE 420 NYSKRFNVPF EYKAIAKRWD AITLKDLNIE KDEIVVVNCL YRLKNIPDET VSDKNPRDVV 480 LNLIKQINPR YFAHGVVNAM YNASFFTTRF REALFHFSSQ FDMFEATMAR EDEGRRMFEQ 540 EIFGRDIMNV IACEGTERVE RPESYKKWQV RNQIAGFKRL PLNQDIVKEV KAKVKMAYHK 600 DFLVDEDSNW MLQGWKGRIM YALSVWEPVH RS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-46 | 262 | 626 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350886.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-155 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M1CZT4 | 0.0 | M1CZT4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078286 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-154 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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