PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00478g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 632aa    MW: 71963.3 Da    PI: 6.7781
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00478g02002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.88.5e-1072606273374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                lL++cAea +s +++   ++L+++++++sp gd ++Rla +f++AL+ar ++  ++++   ++++      s+ l+a++++  +
  Peinf101Scf00478g02002.1 260 GLLTRCAEAAASYNNKTFVEVLKKIRQHSSPFGDGNERLAYCFANALEARFSGGETNTF--SNCKKI---LASDFLKAYQVYITA 339
                               68***************************************************333333..244444...488************ PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               +P+ ++s++ aN+ I + ++++++vHiiDf+i  G+QWp+L++ ++ Rp+gpp+lRiT ++ p++g   +e++eet++rL+++ +
  Peinf101Scf00478g02002.1 340 CPFKRMSNIFANKSIAKLTSEATKVHIIDFGILCGFQWPCLIHGISLRPGGPPKLRITEIDFPQPGfrPAERVEETRRRLENYSK 424
                               *****************************************************************9******************* PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               +++vpfe+++ +akr+++++l++L+++++E ++Vn+ ++l++++de+vs +++rd vL+l+k+++P+ + +   +a +n++ F +
  Peinf101Scf00478g02002.1 425 RFNVPFEYKA-IAKRWDAITLKDLNIEKDEIVVVNCLYRLKNIPDETVSDKNPRDVVLNLIKQINPRYFAHGVVNAMYNASFFTT 508
                               **********.7************************************************************************* PP

                      GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                               rf eal ++s+ fd++ea+++re+e r++ E+e++gr+i+nv+aceg+er+er e+++kW+ r + aGFk +pl+++++k++k+ 
  Peinf101Scf00478g02002.1 509 RFREALFHFSSQFDMFEATMAREDEGRRMFEQEIFGRDIMNVIACEGTERVERPESYKKWQVRNQIAGFKRLPLNQDIVKEVKAK 593
                               ************************************************************************************* PP

                      GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++ + + + v+e+s+++++gWk+r ++++S+W+
  Peinf101Scf00478g02002.1 594 VKMAYHKDFLVDEDSNWMLQGWKGRIMYALSVWE 627
                               *****888*************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.996232607IPR005202Transcription factor GRAS
PfamPF035143.0E-104260627IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MNNTLFSLGD HNSCGGFEFG HHFLSASTTL SSNLGSGFSD EVVNGESRVV ESDYFDGVFK  60
YIHKMLMEED DLESRPCMFQ DCMALQAAEK SFYDALTQKN DFINDDCNAM TQFVESNFIT  120
SDLGGPQSFL EQQESLFCYP CDGALSDILL NPLNNNNHKA AANGGKKNHN QEDGDQYSSE  180
GRNPKQFAST YVAQPEHTEG YDKALLCPAM SPSFYEESTD SENVAWNKQK SCHLKESKRG  240
KPRGSKKGAK TTNEVVDLTG LLTRCAEAAA SYNNKTFVEV LKKIRQHSSP FGDGNERLAY  300
CFANALEARF SGGETNTFSN CKKILASDFL KAYQVYITAC PFKRMSNIFA NKSIAKLTSE  360
ATKVHIIDFG ILCGFQWPCL IHGISLRPGG PPKLRITEID FPQPGFRPAE RVEETRRRLE  420
NYSKRFNVPF EYKAIAKRWD AITLKDLNIE KDEIVVVNCL YRLKNIPDET VSDKNPRDVV  480
LNLIKQINPR YFAHGVVNAM YNASFFTTRF REALFHFSSQ FDMFEATMAR EDEGRRMFEQ  540
EIFGRDIMNV IACEGTERVE RPESYKKWQV RNQIAGFKRL PLNQDIVKEV KAKVKMAYHK  600
DFLVDEDSNW MLQGWKGRIM YALSVWEPVH RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-462626268374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350886.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-155SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1CZT40.0M1CZT4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000782860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-154SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]