PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00459g06026.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 260aa MW: 28920.8 Da PI: 6.7795

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00459g06026.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.4	1.9e-34	14	68	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti++ m+vkgLtl+h+kSHLQkYRl Peinf101Scf00459g06026.1 14 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKSMGVKGLTLYHLKSHLQKYRL 68 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-32	11	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.107	11	71	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-17	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	14	69	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	16	67	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-25	112	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDGTCLVLT ADHKPRLRWT AELHERFVDA VTQLGGPDKA TPKTIMKSMG VKGLTLYHLK 60 SHLQKYRLGK QSYKEATENN NDESSVTESQ EVRSSTLSSS RVVAQDINDG YQVTEAFREQ 120 MEVQRRLHEQ LEVQRHVQLR VEAQGKYLQT ILEKACKALN YKAVACPDLE AAGEELSELA 180 IKVSTDCDGI VSVSSLPEVI MSFENKNASS ISARIGDCLT DDCLPSNRSP VSPMRIGALK 240 KRPRAFANGD ALPVENNMRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	14	70	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794234.1	1e-156	PREDICTED: myb family transcription factor APL-like isoform X2
Refseq	XP_009794236.1	1e-156	PREDICTED: myb family transcription factor APL-like isoform X4
Refseq	XP_016467389.1	1e-156	PREDICTED: myb family transcription factor APL-like isoform X2
Refseq	XP_016467391.1	1e-156	PREDICTED: myb family transcription factor APL-like isoform X4
Swissprot	Q8LAJ7	1e-100	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A1S3ZSK4	1e-155	A0A1S3ZSK4_TOBAC; myb family transcription factor APL-like isoform X4
TrEMBL	A0A1S3ZSR2	1e-154	A0A1S3ZSR2_TOBAC; myb family transcription factor APL-like isoform X2
TrEMBL	A0A1U7XX93	1e-155	A0A1U7XX93_NICSY; myb family transcription factor APL-like isoform X4
TrEMBL	A0A1U7Y4Q6	1e-154	A0A1U7Y4Q6_NICSY; myb family transcription factor APL-like isoform X2
STRING	XP_009794233.1	1e-154	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-87	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]