PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00453g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 378aa MW: 43154.4 Da PI: 8.4614 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.4e-16 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 i++k r v+fskR+ ++KKAeELS +++ae v++fs++gk y y+s Peinf101Scf00453g01011.1 16 LIQSKQARCVSFSKRKSSLFKKAEELSNMTGAESGVLLFSPSGKTYSYCS 65 699*********************************************96 PP | |||||||
2 | SRF-TF | 42 | 1.2e-13 | 204 | 251 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i+ k r+v+fskR++ ++K AeELS L++ae v+++s++g+ y + Peinf101Scf00453g01011.1 204 IKLKQARYVSFSKRKASLFKIAEELSNLTGAESGVLLLSPNGNTYSHC 251 777899************************************988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.628 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-22 | 8 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-17 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-13 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.325 | 194 | 254 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-13 | 194 | 253 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-16 | 196 | 266 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-13 | 204 | 249 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MERKRSMGRQ KIEMKLIQSK QARCVSFSKR KSSLFKKAEE LSNMTGAESG VLLFSPSGKT 60 YSYCSTSIEE IIDKFFQWKQ DESDDDESDN PEKLSRVFKA FDDLRDEIKT IFELEKGRKR 120 RYNIIHPDSK ISPDKNMLNR LVGCKLQLDK LKKLTSRLQE LMPSTSRSVP STSAKPCLSF 180 DLNILPGLDE GECSDRQKIE MKLIKLKQAR YVSFSKRKAS LFKIAEELSN LTGAESGVLL 240 LSPNGNTYSH CSTSIEEITD NFFRWKQDGS DGDESDNLEK MSSVFKAFDD LRDEIKIINE 300 LEKSRRCRYN IIHPGSEIPP DKNMLNRLIE CKLPLDKLKK ITIHLQELMP STSSSLSSTF 360 AKPCLNFDLN VLPGLDEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | DKLKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159413.1 | 2e-48 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2G3AI83 | 3e-51 | A0A2G3AI83_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033861 | 7e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-14 | AGAMOUS-like 29 |