PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00441g05001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

RAV

Protein Properties

Length: 369aa MW: 41292.8 Da PI: 9.5633

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00441g05001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.9	1.2e-13	63	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Peinf101Scf00441g05001.1 63 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDIAAQRFRG 111 78**9888.8*****3.....5***********************98 PP
2	B3	104.6	5.1e-33	196	293	1	94
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v Peinf101Scf00441g05001.1 196 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNTSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVS 280 89**************************99999********************************************** PP EEE-SSSEE..EE CS B3 82 Fkldgrsefelvv 94 F+++ +++l++ Peinf101Scf00441g05001.1 281 FQRSTGGDKQLYI 293 77556665665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.0E-8	63	111	IPR001471	AP2/ERF domain
CDD	cd00018	4.48E-26	63	118	No hit	No description
SuperFamily	SSF54171	4.84E-17	63	119	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.4E-20	64	119	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.165	64	119	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-30	64	125	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	6.8E-42	190	303	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-31	194	293	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.14E-29	195	284	No hit	No description
PROSITE profile	PS50863	15.199	196	299	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-30	196	295	IPR003340	B3 DNA binding domain
SMART	SM01019	5.2E-26	196	299	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048573	Biological Process	photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDGSSCIDAE STTSDSLSIT PASTSTLPVT KTPESLCRMG SGTSVLIDAE NGVEAESRKL 60 PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDIAAQRFR GRDAVTNFKP 120 LLENEDNDDM EIAFLNSHSK AEIVDMLRKH TYGDELEQSK KHFGFTKDGK RACTKDGLMS 180 SLFTIDKVNK AREQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQNGNTS KGVLLNFEDL 240 NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLKAGDIVS FQRSTGGDKQ LYIDFKARNV 300 TPTSVVTTSQ VQVAQVKVVR LFGVNICKVP AVSNVVDNNM TSCSGGKRKI EMELLAFECR 360 KKQRVIDAL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDGSSCIDAE STTSDSLSIT PASTSTLPVT KTPESLCRMG SGTSVLIDAE NGVEAESRKL  60
PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDIAAQRFR GRDAVTNFKP  120
LLENEDNDDM EIAFLNSHSK AEIVDMLRKH TYGDELEQSK KHFGFTKDGK RACTKDGLMS  180
SLFTIDKVNK AREQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQNGNTS KGVLLNFEDL  240
NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLKAGDIVS FQRSTGGDKQ LYIDFKARNV  300
TPTSVVTTSQ VQVAQVKVVR LFGVNICKVP AVSNVVDNNM TSCSGGKRKI EMELLAFECR  360
KKQRVIDAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	2e-59	193	299	11	118	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269\|PubMed:18718758}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00024	PBM	Transfer from AT1G25560	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269\|PubMed:18718758}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU870518	0.0	EU870518.1 Nicotiana tabacum RAV mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613275.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
Refseq	XP_016512131.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
Swissprot	Q9C6M5	1e-151	RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBL	A0A1S4DFM0	0.0	A0A1S4DFM0_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRING	XP_009613275.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2958	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-150	RAV family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A TEMPRANILLO is a regulator of juvenility in plants. Sci Rep, 2014. 4: p. 3704 [PMID:24424565] Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Matías-Hernández L, et al. TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039]