PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00441g02012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 343aa MW: 38456.9 Da PI: 6.3926

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00441g02012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.4e-14	153	199	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Peinf101Scf00441g02012.1 153 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 199 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	153	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-15	154	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-15	154	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.93E-5	163	202	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.1E-4	236	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSDKKEEDQE GNCSHQAIQN LQQCIQQQLL LHQQQENMQP QSFNPVHFSS NTEMSQILPW 60 TLPPVQSFNQ VHHDPFLLPP APSSYGGYLF NRRPQFGYHH EGTSSDHLRF ISDTLVGQVV 120 HHQPGSAPFG LQAELQKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL AKLRSLLPNT 180 TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEIDELT VDNASDEDGK FVIKASLCCE 240 DRSDLLPDLI KTLKALRLKT LKAEITTLGG RVRNVLFITG DNNNYNQDDQ DSSNTSTDDH 300 QQPQYSISSI QEALKAVMEK SSGDDSSSAS VKRQRTNNIN ILS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSDKKEEDQE GNCSHQAIQN LQQCIQQQLL LHQQQENMQP QSFNPVHFSS NTEMSQILPW  60
TLPPVQSFNQ VHHDPFLLPP APSSYGGYLF NRRPQFGYHH EGTSSDHLRF ISDTLVGQVV  120
HHQPGSAPFG LQAELQKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL AKLRSLLPNT  180
TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEIDELT VDNASDEDGK FVIKASLCCE  240
DRSDLLPDLI KTLKALRLKT LKAEITTLGG RVRNVLFITG DNNNYNQDDQ DSSNTSTDDH  300
QQPQYSISSI QEALKAVMEK SSGDDSSSAS VKRQRTNNIN ILS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	3e-80	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016496563.1	0.0	PREDICTED: transcription factor bHLH30-like, partial
Refseq	XP_019257664.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	5e-99	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S4C632	0.0	A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRING	XP_009761017.1	1e-180	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]