PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00403g01010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 308aa MW: 34908.2 Da PI: 7.858

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00403g01010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.9	3.1e-31	52	165	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 f+k ltpsdv+k++rlv+pk++ae++ +++ e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk Peinf101Scf00403g01010.1 52 FEKPLTPSDVGKLNRLVIPKQHAEKYfplnstttnnnnnnnNESGEKGFLLSFEDELGKIWKFRYSYWNSSQSYVLTKGWSRFVK 136 99*************************99999988877633344899******************************** PP HHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 71 angLkegDfvvFkldgr.sefelvvkvfrk 99 +++L++gD+v+F+++ ++ + +++++r+ Peinf101Scf00403g01010.1 137 EKKLDAGDVVLFERH-VlDGDRHFIGWRRR 165 ***********53.33555567999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-39	43	166	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-29	47	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.61E-27	50	160	No hit	No description
PROSITE profile	PS50863	13.366	52	166	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-25	52	166	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-28	52	166	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSINHISSEL LLPQTYFSKQ QHYYIMEPST RQKSSSPKHT NENAEIPKEH LFEKPLTPSD 60 VGKLNRLVIP KQHAEKYFPL NSTTTNNNNN NNNESGEKGF LLSFEDELGK IWKFRYSYWN 120 SSQSYVLTKG WSRFVKEKKL DAGDVVLFER HVLDGDRHFI GWRRRNTAGG TTVVPPGSGG 180 GGGWGQVCYG GNTYPYAGVP YQPAGRGDQM QNQTGANGNN TRRQVRLFGV NLAECEVDDS 240 SWSEPSTPDG SFTSSHHQQS HESQGQASQH YYQYQTHYSK PQIDPANHHN NMDVNFSGDV 300 NQMRYHQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-49	48	169	4	117	B3 domain-containing transcription factor NGA1
5os9_B	2e-49	48	169	4	117	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761495.1	1e-139	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	9e-68	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1U7VI14	1e-138	A0A1U7VI14_NICSY; B3 domain-containing protein At2g36080
STRING	XP_009761495.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	9e-65	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]