PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00395g06068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 118aa MW: 13390.8 Da PI: 10.7537 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.9 | 3.5e-15 | 15 | 44 | 2 | 31 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLC 31 +ien+ n qvtfskRrng++KKA+EL v++ Peinf101Scf00395g06068.1 15 KIENSNNLQVTFSKRRNGLFKKANELAVMT 44 79**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.1E-12 | 6 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.535 | 6 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-14 | 7 | 44 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 8.03E-18 | 7 | 44 | No hit | No description |
PRINTS | PR00404 | 7.6E-13 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-14 | 15 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-13 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
MARLSKGRKK VPMAKIENSN NLQVTFSKRR NGLFKKANEL AVMTVLNTQL NFLEDQLASA 60 LELKRKLDDE TKILEKQLGI IPMKEMNMTQ ATMMVQALHE LSLKVKNYGT ANMPPKSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | XP_009600724.1 | 2e-22 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19252 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-13 | M-type_MADS family protein |