PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00395g06012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25857.6 Da    PI: 10.5617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00395g06012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.9e-231762449
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +n+sn qvtfskRr+g++KKA+EL++LC++eva+++fs+  k+y +
  Peinf101Scf00395g06012.1 17 QNESNLQVTFSKRRAGLFKKASELCTLCGTEVAIVVFSPGKKVYSF 62
                              79******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-30665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.198666IPR002100Transcription factor, MADS-box
CDDcd002653.82E-32775No hitNo description
SuperFamilySSF554551.31E-26790IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-18828IPR002100Transcription factor, MADS-box
PfamPF003196.9E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARKSKGRQK VDMVKMQNES NLQVTFSKRR AGLFKKASEL CTLCGTEVAI VVFSPGKKVY  60
SFGHPCVDSV VDRYLARNPP PNINGHNQLI EAHRNASVRE LNMELTNTER ILEMERHRAE  120
DLKLRRRVNG HWWEAPIEEL NFFQLQQLKD AMEGLKKKVE REAQHQQMVT SNAFPFLNFG  180
SALVPLGARS SSSYGSNARP YGFQNKVLGL NLGAPFANRA SGSTSSVVPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-16792186Myocyte-specific enhancer factor 2A
3kov_B3e-16792186Myocyte-specific enhancer factor 2A
3kov_I3e-16792186Myocyte-specific enhancer factor 2A
3kov_J3e-16792186Myocyte-specific enhancer factor 2A
3p57_A3e-16792186Myocyte-specific enhancer factor 2A
3p57_B3e-16792186Myocyte-specific enhancer factor 2A
3p57_C3e-16792186Myocyte-specific enhancer factor 2A
3p57_D3e-16792186Myocyte-specific enhancer factor 2A
3p57_I3e-16792186Myocyte-specific enhancer factor 2A
3p57_J3e-16792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234721.11e-130PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-61AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1J6L5Z81e-129A0A1J6L5Z8_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009601691.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-64AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]