PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00395g06011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 202aa MW: 22508 Da PI: 9.9455 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63 | 3.2e-20 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +sn vtfskRr g++KKA+EL++LC++e+a+++fs+ k++ + Peinf101Scf00395g06011.1 3 KESNLLVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGRKVFSF 47 578889********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-17 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.586 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-22 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-21 | 3 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSKESNLLVT FSKRRSGLFK KASELCTLCG VEIAIVVFSP GRKVFSFGHP NVESIIDRFL 60 ITRNNIPIAT SSTTSQLVEA HRNANVRELN VQLMEIINQL EFEKKREVEI EKIRKAAKLG 120 NNWWEGPVNE LGLGELEQLK LGMEELKKNV TKQMQKFILE ASSSPAGLFL GGSFFNGGQV 180 DDVKNIKGLG LSIATNRNTI FP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581988.1 | 1e-108 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016581993.1 | 1e-108 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 8e-57 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G3BV97 | 1e-107 | A0A2G3BV97_CAPCH; Agamous-like MADS-box protein AGL62 | ||||
STRING | PGSC0003DMT400013136 | 1e-105 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-44 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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