PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00395g00033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 307aa MW: 33071.6 Da PI: 6.4351 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.5 | 5.9e-16 | 219 | 254 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp g+++LCnaCGl+++ kg Peinf101Scf00395g00033.1 219 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 254 *****99999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.6E-12 | 83 | 118 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.818 | 83 | 118 | IPR010399 | Tify domain |
Pfam | PF06200 | 9.3E-13 | 86 | 117 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.7E-16 | 150 | 192 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.205 | 150 | 192 | IPR010402 | CCT domain |
SMART | SM00401 | 4.4E-12 | 213 | 271 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.814 | 213 | 270 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-11 | 214 | 265 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 217 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.55E-14 | 218 | 268 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 219 | 246 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-14 | 219 | 254 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MYGRDRMNAA ALHHQIDDDD DDDDDVTVAG DTVGRESIDN PTPYHHQHHS HSHALHNGSM 60 EATMNGVESN ALYCPPSEIV AAGSGASDQL TLSFQGEVYV FDAVSPEKVQ AVLLLLGGYE 120 VPAGIPTVSV AAQSQRASGD FSGRVNLPQR AASLNRFREK RKERCFDKKI RYTVRKEVAM 180 RMQRKKGQFT SSKSISDEAG SSTADWNEGS GQEEQETSCR HCGISSKSTP MMRRGPAGPR 240 SLCNACGLKW ANKGILRDLS KVPTPGAQDQ IAKSGEQTNS EPNGSEAMAA TAIIHAGGDN 300 TVVTAER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233128 | 3e-37 | AC233128.10 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence. | |||
GenBank | AC240866 | 3e-37 | AC240866.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence. | |||
GenBank | HG975440 | 3e-37 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 3e-37 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609389.1 | 1e-169 | PREDICTED: GATA transcription factor 28-like | ||||
Swissprot | Q8GXL7 | 1e-83 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A1S4B0D6 | 1e-162 | A0A1S4B0D6_TOBAC; GATA transcription factor 24-like | ||||
TrEMBL | A0A1U7X855 | 1e-162 | A0A1U7X855_NICSY; GATA transcription factor 24-like | ||||
TrEMBL | A0A2G2VG58 | 1e-162 | A0A2G2VG58_CAPBA; GATA transcription factor 28 | ||||
STRING | XP_009609389.1 | 1e-168 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 7e-86 | ZIM-like 1 |
Publications ? help Back to Top | |||
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