PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00384g04017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 353aa MW: 40178.9 Da PI: 6.9042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00384g04017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	200	216	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r n++ Peinf101Scf00384g04017.1 200 FSCPVCFKTFNRYNNMQ 216 89********9988765 PP
2	zf-C2H2	14.5	0.0001	273	295	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Peinf101Scf00384g04017.1 273 FMCRKCGKAFAVRGDWRTHEKNC 295 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.6E-4	200	215	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.69E-6	255	293	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.5E-6	260	293	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	273	293	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MTDPYHHPNF YSQQWLKFNP NIPSSNPTPN FLNNFHHSTN HQSYYQSTPP PNSPPLKEAL 60 PLLTLSPIKH DEQEQPCCSF THSTLDLDKI TKATTRDQHI YNFCNKKDDG QLLLSSVDQD 120 EEENEGDVTV ALHIGLPNPS AADLASIAAS CSNESTKDHE EETDHDVSAS ITMNMINRSL 180 NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQVRPE SLRGTQPTGM LRLPCYCCAP 240 GCRNNIDHPR AKPLKDFRTL QTHYKRKHGM KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY 300 CICGSDFKHK RSLKDHIKAF GHGHGAYGID SCFEEEEDPA SEVEQDYNNE STQ

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MTDPYHHPNF YSQQWLKFNP NIPSSNPTPN FLNNFHHSTN HQSYYQSTPP PNSPPLKEAL  60
PLLTLSPIKH DEQEQPCCSF THSTLDLDKI TKATTRDQHI YNFCNKKDDG QLLLSSVDQD  120
EEENEGDVTV ALHIGLPNPS AADLASIAAS CSNESTKDHE EETDHDVSAS ITMNMINRSL  180
NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQVRPE SLRGTQPTGM LRLPCYCCAP  240
GCRNNIDHPR AKPLKDFRTL QTHYKRKHGM KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY  300
CICGSDFKHK RSLKDHIKAF GHGHGAYGID SCFEEEEDPA SEVEQDYNNE STQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-103	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792207.1	1e-156	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q9SVY1	1e-120	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U7XJH1	1e-154	A0A1U7XJH1_NICSY; protein TRANSPARENT TESTA 1-like
STRING	XP_009792207.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-122	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]