PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00381g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 25650.4 Da PI: 4.429 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.1e-10 | 14 | 42 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd +lv +++++G+g+W++++ Peinf101Scf00381g00018.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPT 42 79************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.88E-9 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.181 | 9 | 71 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.4E-9 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.37E-7 | 16 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTDIHTAK QALVDALSLD 60 KKTTNVVSPN INSSTISLPV GQTSSYASSA ENISRLLQNW MKNSPKSSQT TSTSTTSQRS 120 FNNLSMVSSS SPSEVTMSAT TPEGLDSLFS FNSSYNNSDV SQSMLTDEVV AGIFQDGSKQ 180 NWQNFKDESG IFQKGSKQNL ETQVPLTLLE NWLFDDANAQ TQEELMGIGV GMEWP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-38 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-38 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257201.1 | 5e-76 | PREDICTED: myb-related protein 306-like | ||||
TrEMBL | A0A1J6IAZ1 | 1e-74 | A0A1J6IAZ1_NICAT; Transcription factor myb30 | ||||
STRING | XP_009793069.1 | 3e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 5e-28 | myb domain protein 60 |