PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00372g05018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 495aa    MW: 54517.4 Da    PI: 8.8898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00372g05018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0588110123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peinf101Scf00372g05018.1  88 FVCEICNKGFQRDQNLQLHRRGH 110
                               89*******************88 PP
2zf-C2H212.50.00044164186123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k++  +s+ k H + +
  Peinf101Scf00372g05018.1 164 WKCEKCSKRYAVQSDWKAHSKIC 186
                               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.24E-687110No hitNo description
Gene3DG3DSA:3.30.160.601.6E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.9E-588110IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94988110IPR007087Zinc finger, C2H2
SMARTSM003550.01788110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.24E-6159184No hitNo description
SMARTSM00355130164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MIKGMLGDDS MSNLTSASNE ASISSSNNRT EIGTALYPQQ SLASPANIQT QPPAAIANKK  60
KRNLPGNPDP EAEVIALSPR SLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
NKEVRKKVYV CPEPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK  180
AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAIIPPLQNP LISSSSSHHL  240
NLHTLQNFQL KQEQQQISTN NFNLVAQHPS NELSSQLFMH PHDQNPINNP TNNNHNSSNI  300
FGAASAHMSA TALLQKAAQM GVTSSNHMTS ATSFFSPTSS SNVTSTTTGL AVAREDHQFE  360
NSAANNNNSG FVTSHHGLAS YNGDNSISKG TNFHFSVTSG FMDQVNDMHN NIGHVGFDEG  420
FGGGTPLMRS KELGGGNINE GMTRDFLGLR AFPDHRDFLN TATTAGLHHQ MGGSSSASSY  480
DHHHQQTQNQ SPWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34160221364Zinc finger protein JACKDAW
5b3h_F5e-34160221364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114126KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4577651e-135CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBankHG9754471e-135HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-135HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537813.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2G2W6480.0A0A2G2W648_CAPBA; Protein indeterminate-domain 1
STRINGXP_009793158.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]