PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00372g03018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 445aa    MW: 50822 Da    PI: 4.9435
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00372g03018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48e-32301532102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............ CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............ 74 
                               Fl+k+ye++ed++++++isws+  nsfvv+d+++f++++LpkyFkhsnf+SF+RQLn+Y   ++ + +   ++            
  Peinf101Scf00372g03018.1  30 FLTKTYEMVEDPATDTVISWSKARNSFVVWDSHKFSTSLLPKYFKHSNFSSFIRQLNTYVEVQIVSAQMVGDEfyrlclmvvpmn 114
                               9**********************************************************66555555555555899***999999 PP

                               ...........XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  75 ...........kekiweFkhksFkkgkkellekikrkks 102
                                          +++ weF+++ F  g+k+ll++ikr+++
  Peinf101Scf00372g03018.1 115 trrkkqgfrkvDPDKWEFANEGFLGGQKHLLKTIKRRRN 153
                               9988777665449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3026151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-4726151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3526151IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-2830151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-153053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-156880IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-158193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEEGVKVKVE EESVTVVPME GLHDVGPPPF LTKTYEMVED PATDTVISWS KARNSFVVWD  60
SHKFSTSLLP KYFKHSNFSS FIRQLNTYVE VQIVSAQMVG DEFYRLCLMV VPMNTRRKKQ  120
GFRKVDPDKW EFANEGFLGG QKHLLKTIKR RRNVGQSMNQ QGSGPCIEIG YYGMEEELER  180
LKRDKNLLMS EIVKLRQQQQ SSRNQIIAMG EKLESTERKQ VQMMSFLAKI FSNPTFLQQY  240
LDKQAQRKDR QRIEVGQKRR LTMTPSAENL QDVVSVAIEN DQPINYSAQE REAELANMGT  300
DMEMLFSAVL DNGSSNARST SVAVANGAVM NTVPENIWEE FLSEDLISGD QAEEVLVVDD  360
QLEVDVEVED LVANTSEWGE ELEDLVRLQF NFHEALRKSL IGHHILLCTG LCILQLLSLR  420
FLSLGMRTTD ILVQHLLKAP DVYVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-202815127129Heat shock factor protein 1
5d5v_B1e-202815127129Heat shock factor protein 1
5d5v_D1e-202815127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX676011e-134X67601.1 L.peruvianum Lp-hsf30 mRNA for heat stress transcription factor 30.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250187.10.0PREDICTED: heat shock factor protein HSF30
SwissprotP411520.0HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U7Y8800.0A0A1U7Y880_NICSY; heat shock factor protein HSF30 isoform X1
STRINGXP_009799323.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-103heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]