PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00371g04008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20360.6 Da PI: 5.001 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 30 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r+++ g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++l+g Peinf101Scf00371g04008.1 30 NFRGIRQRS--GKWVSEIREPRK---TSRIWLGTFPTPEMAAAAYDVAALALKG 78 58***9865..*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-10 | 29 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.64E-18 | 29 | 88 | No hit | No description |
SMART | SM00380 | 1.5E-31 | 30 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 30 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.284 | 30 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-18 | 31 | 87 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSHYPYNVTP SHDNNPPPSE NISPRGRHPN FRGIRQRSGK WVSEIREPRK TSRIWLGTFP 60 TPEMAAAAYD VAALALKGPD APLNFPELVN SYPLPHSLSG VDIRTAAATA AAFKAPHAQQ 120 SAEVLPDTTV GGQGQGYMDE EEIFGMPKLL DDMAEGMLVS PPRMHQSTSY DESPENSDGD 180 SLWSYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 25 | 91 | 2 | 68 | ATERF1 |
3gcc_A | 5e-15 | 25 | 91 | 2 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340524.1 | 2e-77 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 2e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | M1CDC2 | 4e-76 | M1CDC2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065067 | 6e-77 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-46 | ERF family protein |
Publications ? help Back to Top | |||
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