PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00339g05001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21590.1 Da PI: 4.5282 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.6e-14 | 7 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l ++ ++ +W+ ++ g+ Rt+k+c++rw +yl Peinf101Scf00339g05001.1 7 KGPWSPEEDQKLTSYIMKYRIWNWNQMPKFAGLSRTGKSCRLRWVNYL 54 79*****************999************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.008 | 2 | 58 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 4 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-11 | 6 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 7 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.73E-20 | 8 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.38E-9 | 9 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-6 | 58 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MGTNSKKGPW SPEEDQKLTS YIMKYRIWNW NQMPKFAGLS RTGKSCRLRW VNYLRPDLKR 60 GPFSMEEVET VIRMYQSLAK KAKELEMRTR GETQEKPNQS LDMSSSDITF DENHNWDFAN 120 FSETSSEGDY CVNSLVNQEA IPIIDSMVIL ESNPTTSEDP DFRDVSVNSS NVDFWLELYM 180 AAENLAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240768.1 | 8e-60 | transcription factor MYB30 | ||||
TrEMBL | A0A3Q7GR98 | 2e-58 | A0A3Q7GR98_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g034000.1.1 | 3e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-31 | MYB-like 102 |