PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00339g04009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 200aa    MW: 23030.7 Da    PI: 4.4086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00339g04009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.51.9e-151562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd++l+ ++ ++   +W+ I++  g+ Rt+k+c++rw +yl
  Peinf101Scf00339g04009.1 15 KGAWSPEEDQKLISYIMKYRIWNWNQIPKFAGLSRTGKSCRLRWVNYL 62
                              79*****************999************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.751066IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-221265IPR009057Homeodomain-like
SMARTSM007171.3E-121464IPR001005SANT/Myb domain
PfamPF002491.9E-141562IPR001005SANT/Myb domain
SuperFamilySSF466893.38E-221689IPR009057Homeodomain-like
CDDcd001677.33E-111762No hitNo description
Gene3DG3DSA:1.10.10.605.7E-76689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQEPYNKNVG MNSKKGAWSP EEDQKLISYI MKYRIWNWNQ IPKFAGLSRT GKSCRLRWVN  60
YLRPDLKRGP FSMEEVETII RMYQSLGNRA ETQEKSLLAT APIEPNQSPD VSSSHTTFDG  120
NQNSDFTNFS ETSLEDNYCV NSLVNQEVVP IDSMVMLESN PSTSENRDFY VQDFMDMTSI  180
NSSNVDFWLE LYMAAENLVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-12158927100MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078427.17e-62transcription factor MYB14-like
TrEMBLK4C4L13e-59K4C4L1_SOLLC; Uncharacterized protein
TrEMBLM1BRU73e-59M1BRU7_SOLTU; Uncharacterized protein
STRINGSolyc06g033870.1.15e-60(Solanum lycopersicum)
STRINGPGSC0003DMT4000515135e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-31myb domain protein 14