PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00339g02013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 835aa    MW: 96232.3 Da    PI: 6.0233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00339g02013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13853248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              g W   Edell+ +v ++G+++W++I++ +  ++t+kqck rw+ +l
  Peinf101Scf00339g02013.1  8 GVWKNTEDELLKALVMKYGKNQWARISSLLV-HKTAKQCKARWYEWL 53
                              78*****************************.************986 PP
2Myb_DNA-binding24.65.7e-0861103348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT  Ede+l+++ k++++  W+tIa  +g   t+ qc +r+ ++l
  Peinf101Scf00339g02013.1  61 EWTRKEDEKLLHLAKLMPSQ-WRTIAPIIG--HTPTQCLERYENLL 103
                               6******************9.********8..9*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.29157IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-17557IPR009057Homeodomain-like
SMARTSM007171.1E-15655IPR001005SANT/Myb domain
PfamPF139214.9E-131070No hitNo description
CDDcd001679.48E-121053No hitNo description
SuperFamilySSF466898.63E-1933108IPR009057Homeodomain-like
CDDcd116591.59E-2555104No hitNo description
Gene3DG3DSA:1.10.10.606.8E-1158104IPR009057Homeodomain-like
PROSITE profilePS5129413.24258107IPR017930Myb domain
SMARTSM007171.1E-858105IPR001005SANT/Myb domain
PfamPF118318.3E-50451690IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MKVLIKGGVW KNTEDELLKA LVMKYGKNQW ARISSLLVHK TAKQCKARWY EWLDPSIKKI  60
EWTRKEDEKL LHLAKLMPSQ WRTIAPIIGH TPTQCLERYE NLLDDNENYD LSDDDPRKLR  120
LVRYENLLDD NENYDLSDDD PRKLRLVRYE KLLDDNENYD LSDDDPRKLR RGEIDTNPES  180
RPTRPDPVDM DEDEKEMLSE AWARLANTRG KKAKRKSREK QLQEAHRLAS LQERRELKAA  240
GLIDEEKKEG IDYNAEIPFE KKPPPGFYDV TDEECTVGLQ PKFPYTIEEL EGERRVDKEA  300
RLRKHDIARN KIATRRDFPA AILHANKHNH DPEAVLRKKS KLNLPAPQIL DHELEAIAKI  360
GVSSDLIGIG SDEFSEWNAA TRALLADYAQ TPQHAMTSQR TPSNKQKAVM MEAENQPRLT  420
ESQTPLLGGK NPMLRPSDIF GVTAKRRQVQ TPHPLLTPIA TPGGTGLTHR IGMRRSKDSV  480
GITPKGAPMR DELYINEEMD IIAKQGQLNS KKELLSGLKS LPQPKNDYQI VVQPAADENE  540
EPEEKIEQDT YDRIVREKAE EVATRQALLL KRSKVMQREL PRPPIASLEL IRSSIMKADE  600
DESSFVPPTL LEQAEEIIRK ELLSMLEHDN TKYPLDEKAE KEKKKGVKKL FAEPEVEDFE  660
EDELKEADEL IKDEAQFLRV AMGHGSESLD EFFKAHKTTL NDIMYFPTRN AYGLSSVAGN  720
MEKLAVLQNE LENVNKKLNH ETKRAAKLEQ KIEVLTNGYQ MRVGKLQHIE SMFNQMATAG  780
VKLECFQSLQ KQEQLAASHR INNLWEEVQK QKELERNMQN RYCNLIADME KMQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028333799Cell division cycle 5-like protein
5xjc_L0.028333799Cell division cycle 5-like protein
5yzg_L0.028333799Cell division cycle 5-like protein
5z56_L0.028333799Cell division cycle 5-like protein
5z57_L0.028333799Cell division cycle 5-like protein
5z58_L0.028333799Cell division cycle 5-like protein
6ff4_L0.028333799Cell division cycle 5-like protein
6ff7_L0.028333799Cell division cycle 5-like protein
6icz_L0.028333799Cell division cycle 5-like protein
6id0_L0.028333799Cell division cycle 5-like protein
6id1_L0.028333799Cell division cycle 5-like protein
6qdv_O0.028333799Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631530.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1U7YGI30.0A0A1U7YGI3_NICSY; cell division cycle 5-like protein
STRINGXP_009631530.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]