PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00337g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRF
Protein Properties Length: 569aa    MW: 61503.2 Da    PI: 7.822
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00337g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.7e-25198242145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Peinf101Scf00337g00001.1 198 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVEG 242
                               79****************************************985 PP
2QLQ60.64.3e-21129165137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yK+++an+PvP++Ll +++k
  Peinf101Scf00337g00001.1 129 GPFTPSQWMELEHQALIYKHIVANVPVPHQLLIPLKK 165
                               59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.7E-13129165IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-15130163IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.416130165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954198242IPR014977WRC domain
PfamPF088792.9E-21199241IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDFCGVMNAT TMETCQESVN TKSNSNSING SGHLKQERSS LYDDDETLRP FKVCKQMAQQ  60
RSGHSTMLSF STQKSEEIPF LYNGSVVQDS SKSLSFPLFD SGSHYSRASA YGSGGPTEST  120
RGPFARFRGP FTPSQWMELE HQALIYKHIV ANVPVPHQLL IPLKKSLNPY AFSGLSSGSY  180
ASNWGWGTFH LGFAGNTDPE PGRCRRTDGK KWRCSREAVP DQKYCERHIN RGRHRSRKPV  240
EGQNGHAVSG STTSKVASVA PSSATVISTG GTSNSLGAIQ HQFNSLQPRA ANPSTDQLVN  300
RMQDHKGVSV ISPTIGLKPK DSAISVHKQH NGFGLSSLSE FGLVSSDSLL NPSQRTSFVN  360
PKNSDAFLDF NTQEQSEQHP VHHFIDGWTK EQSSRASASW PDELKSDWTQ LSMSIPMAAS  420
DFQSSSSSCQ EKLTLSPLRL SRDFDPIQMG LGVTNSNGES MQKTATWIPV SWGNSLGGPL  480
GEVLNSTAGN AGDGKNYSTL NMATEVWDNS PPFGSSPTGV LQKSTFVSLS NSSSGSSPRA  540
ESKKVDEGVG MCDEVIGSTL ASSLCIPSM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589483.10.0PREDICTED: growth-regulating factor 1-like
SwissprotO810011e-113GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A1S3XCF00.0A0A1S3XCF0_TOBAC; growth-regulating factor 1-like
TrEMBLA0A1U7XMW50.0A0A1U7XMW5_NICSY; growth-regulating factor 1-like
STRINGXP_009589483.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-111growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]