PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00331g05009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 884aa    MW: 97867.8 Da    PI: 6.3048
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00331g05009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-10128182155
                               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkk 55 
                               f+k+lt sd++++g +++p++ ae+  ++++++ ++l+ +d++g++W++++i+r++
  Peinf101Scf00331g05009.1 128 FCKTLTASDTSTHGGFSVPRRAAEKDySQQPPC-QELIAKDLHGNEWKFRHIFRGT 182
                               99*********************9997666666.59***************99876 PP
2Auxin_resp117.21.3e-38243326183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t+s F++++nPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Peinf101Scf00331g05009.1 243 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 326
                               79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-29113246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-16121231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.66E-9127190No hitNo description
PfamPF023624.8E-8128182IPR003340B3 DNA binding domain
SMARTSM010191.9E-4128219IPR003340B3 DNA binding domain
PfamPF065071.1E-33243326IPR010525Auxin response factor
PfamPF023097.5E-7742832IPR033389AUX/IAA domain
SuperFamilySSF542771.31E-7744824No hitNo description
PROSITE profilePS5174523.682750834IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MRVSSSGFNP QSEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPG LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSAQEQKDV CLLPAELGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKDYSQQPPC QELIAKDLHG NEWKFRHIFR  180
GTLFHFTLSS LKSLIFAKLL SPSIRNENNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL  240
AAAAHAAATN SRFTIFFNPR ASPSEFVIPL AKYAKAVYHT RISVGMRFRM LFETEESSVR  300
RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFS  360
LRLKRPWPSG LPSLPGMCVS LLHLGFPNGD MTMNSPLSWL RGDMGDQGIQ SLNFQGFGVA  420
PFMQPRMDAS MLGLQPDILQ TMAALDPSKL ANQSLMQFQS IPSSSASLSQ SQKLQSQQNL  480
LQGFSENQLI SQAQMLQQQL QRRQSYNDQQ QLLQPQLQQH HQVNSQFQHQ QQTEAFSNLS  540
QMAPATQPQL SHLQVLGSSG SQQTFSDILG NHGNASANST MQSLLSSFSR DGASAVLSMH  600
ETHPQVSSSS SSKRIALESQ VPSRVTPFAV PQAEDVIAHN TKVSDLSSLL PPFPGREFSD  660
YRGVPDSQSN ALYGFNSDSL NNILQTDMSN MKGSTGDNAS LSIPYATSTF TSNLGNEYPL  720
NSDMTTSSCV DESGFLQSSE NGDQENPTNR TFVKVHKSGS FGRSLDISKF SSYHELRSEL  780
ARMFGLEGLL EDPERSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK  840
EGLDLPNTVQ TQRLPSNGNG CDDYMNQKGS RNTMNGIPLG SLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1331634747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249245.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1J6IHI70.0A0A1J6IHI7_NICAT; Auxin response factor
STRINGXP_009602213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]