PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00330g10042.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family CPP
Protein Properties Length: 798aa    MW: 87182.2 Da    PI: 6.9958
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00330g10042.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.8e-16491530241
                       TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                               ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk  
  Peinf101Scf00330g10042.1 491 TCKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNKPM 530
                               689**********************************975 PP
2TCR31.34e-10577598122
                       TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                               ++k+gCnCkks ClkkYCeC++
  Peinf101Scf00330g10042.1 577 RHKRGCNCKKSGCLKKYCECYQ 598
                               589******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.9E-17490531IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.303491632IPR005172CRC domain
PfamPF036389.2E-12493528IPR005172CRC domain
SMARTSM011143.4E-13577633IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.3E-6579598IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MGDEKVSLKS EKKEGVVMDT PDRNKNQIST PLSKFEDSPF SNFLNNLSPI MPVKTVQITQ  60
PLNSLSFASV PSVFTSPHLS SLKGSRFLRR QQLSDPSRPE FSSDDGVKVD TDEGISDVVN  120
YSNVKENFGP KISVVEASDM PSSECSKLAS ELARTLNYEC SSPSIIANCV IRSTCLSEVT  180
GRSSMCVPLV QEMSEKGVLS YEVSMEGVSQ TEQNKEASAC DWESLISDAT DVLIFDSPSD  240
PEAFTKERDP GFRSYDFVSN GLRDSQDSSG KVGGDGNELE KHSTQPGEES GLQECLESQS  300
MVLDSSPTNN AMAEDLSKKV DNEVLMISGL YRGMRRRCLV FEMVGARNKH IDESCGSSGA  360
GSSSEQNVGG NPTSEEKQLV KQKPVNESSR CVLPGIGLHL NALAATSKDG KVVKHESNAS  420
GKKLLVAARS AVNFQPLTIG QESLNKSVPV TFTKRDIVLE NASQTPENTA KEDLNQSSKK  480
RCKLEPGEGE TCKRCNCKKS KCLKLYCECF AAGVYCVEPC SCQDCFNKPM HVDTVLATRK  540
QIESRNPLAF APKVIRSCDS ALSETRDDSS KTPASARHKR GCNCKKSGCL KKYCECYQVF  600
LFLFSREKWF FLKGGVGCSI NCRCEGCKNA YGRKDGTDGY VDEEETVTFE KSIVDRCSQK  660
ILVQSDTEQN IDSATPATPL RFGRLPMQLP FSLKNKPPRS SLLSIGSSSG TYDQGIDRPN  720
FVQAQPLFNK TSDTTQEDEI PEVLRGTDSP ISTIKSASPN SKRVSPPHCN IGVSPGRRSS  780
RKLILKSIPS FPSLTPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1349362912120Protein lin-54 homolog
5fd3_B3e-1349362912120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770245.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A1U7W7L20.0A0A1U7W7L2_NICSY; protein tesmin/TSO1-like CXC 2 isoform X2
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-146TESMIN/TSO1-like CXC 2