PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00330g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YB | ||||||||
Protein Properties | Length: 230aa MW: 25895.6 Da PI: 6.7901 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 170.7 | 1.6e-53 | 54 | 149 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easd+cq ekrktingdd+++al+ lGf+dyv+plk+y Peinf101Scf00330g01001.1 54 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDRCQTEKRKTINGDDIIYALTILGFDDYVAPLKTY 138 89*********************************************************************************** PP NF-YB 87 lkkyrelegek 97 l kyrelegek Peinf101Scf00330g01001.1 139 LLKYRELEGEK 149 ********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-52 | 47 | 169 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.11E-39 | 56 | 167 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-27 | 59 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.0E-17 | 87 | 105 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 90 | 106 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.0E-17 | 106 | 124 | No hit | No description |
PRINTS | PR00615 | 4.0E-17 | 125 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEDERQGNGP NVTIKSSPES TSRITPITTS TFTTNSSNVK NNNNNNNNKS TSTKEQDRFL 60 PIANVGRIMK KVIPGNGKIS KDAKETVQEC VSEFISFVTG EASDRCQTEK RKTINGDDII 120 YALTILGFDD YVAPLKTYLL KYRELEGEKL NVPKQQQQQQ QQQQQQQQQL VQLHDHTSNM 180 PSYNNVYSPT GLLPQASFLS TDQSFSLPFS QNSTQSQLTK QEQIDSVGHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 2e-44 | 52 | 144 | 1 | 93 | NF-YB |
4awl_B | 2e-44 | 52 | 144 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 2e-44 | 52 | 144 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552944.1 | 1e-102 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | Q9SIT9 | 5e-63 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A1U8F9N0 | 1e-100 | A0A1U8F9N0_CAPAN; nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A2G2UZ41 | 1e-100 | A0A2G2UZ41_CAPBA; Nuclear transcription factor Y subunit B-7 | ||||
STRING | PGSC0003DMT400043176 | 2e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 6e-63 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
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